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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataatataaaattaaaatgtggtcaagcgcatgcaagatgtactttgtgcagtctgacgatataaaaatctgtcattttattttgatttcttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCCGCACAGTATAGCAAACTGCGAAGCCTGCAACTACTAGAGTTTGGTCTGT

Basic information

species Zea mays
transcript GRMZM5G896082_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32916892|gb|CF021704.1|CF021704
EST:     ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGG                         GAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGCTGT-C
genomic: ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGGgtatgaaaaa ... ttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
EST: gi|50332707|gb|CO527833.1|CO527833
EST:     ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGG                         GAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
genomic: ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGGgtatgaaaaa ... ttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
EST: gi|149111106|gb|EE294602.2|EE294602
EST:     ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGG                         GAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
genomic: ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGGgtatgaaaaa ... ttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
EST: gi|78092903|gb|DV521277.1|DV521277
EST:     ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGG                         GAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
genomic: ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGGgtatgaaaaa ... ttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
EST: gi|24934480|gb|CA452698.1|CA452698
EST:     ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGG                         GAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGCTGTCC
genomic: ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGGgtatgaaaaa ... ttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
EST: gi|32859730|gb|CD999411.1|CD999411
EST:     ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGG                         GAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGCTGTCC
genomic: ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGGgtatgaaaaa ... ttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
EST: gi|149058762|gb|EE156780.2|EE156780
EST:     ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGG                         GAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
genomic: ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGGgtatgaaaaa ... ttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC
EST: gi|32859729|gb|CD999410.1|CD999410
EST:     ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGG                         GAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGCTGTCC
genomic: ACCCCTCAAAAAGATTTGGCCCACACTCTGGTCTCTCTGTTTGCAGCTGGgtatgaaaaa ... ttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcagtctgacgatataaaaatctgtcattttattttgatttcttcttttcagGAACAGGGAGCTCCAGAGCTTGTGAATTCTATAGAATAAAGGTGGTTGTCCGCACAGTATAGCAAACTGCGAAGCCTGCAACTACTAGAGTTTGGTCTGT
                              ttttattttgatttct  CT-rich tract
              atataaaaatctgtca  TA-rich tract