1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctagctgtttgaatttaaacagatgagctttaatttctgataggtatcctagagggttgattgtagcttgcttgtaattaactattgcctggctatgcagTTGGCCCTTGGCTTTTGTTGGAAAATTCATTCCAGTTCCGAGGACTGAATTGAAGGATCTCATTGTAAGGTGTTGGCCTAAAC
species | Zea mays |
transcript | GRMZM5G893864_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGACTCAACTGGAAGCTTTGGCTTGTTTCTGTAGTTATTGCTTTTCTAAG TTGGCCCTTGGCTTTTGTTGGAAAATTCATTCCAGTTCCGAGGACTGAATTEST: gi|33770799|gb|CF273093.1|CF273093
genomic: AGACTCAACTGGAAGCTTTGGCTTGTTTCTGTAGTTATTGCTTTTCTAAGgtaagatacc ... ggctatgcagTTGGCCCTTGGCTTTTGTTGGAAAATTCATTCCAGTTCCGAGGACTGAATT
EST: AGACTCAACTGGAAGCTTTGGCTTGTTTCTGTAGTTATTGCTTTTCTAAG TTGGCCCTTGGCTTTTGTTGGAAAATTCATTCCAGTTCCGAGGACTGAATT
genomic: AGACTCAACTGGAAGCTTTGGCTTGTTTCTGTAGTTATTGCTTTTCTAAGgtaagatacc ... ggctatgcagTTGGCCCTTGGCTTTTGTTGGAAAATTCATTCCAGTTCCGAGGACTGAATT
atcctagagggttgattgtagcttgcttgtaattaactattgcctggctatgcagTTGGCCCTTGGCTTTTGTTGGAAAATTCATTCCAGTTCCGAGGACTGAATTGAAGGATCTCATTGTAAGGTGTTGGCCTAAAC
aattaac putative branch site (score: 112)
ttgtaattaactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagctgtttgaatttaaacagatgagctttaatttctgataggtatcctagagggttgattgtagcttgcttgtaattaactattgcctggctatgcagTTGGCCCTTGGCTTTTGTTGGAAAATTCATTCCAGTTCCGAGGACTGAATTGAAGGATCTCATTGTAAGGTGTTGGCCTAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- agctgtt
- - - - - - - - aaacaga
- - - - - - - - - - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctattgc