Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaataaatgatccctttgttcatctctgatttatttatttattttcattttttaggagccaattcagtgaggaaaagggaatattcctgtactggaatcttgaacagaagcagcatgaagtcttaaattttaaaagcggtcttttatttttgtttttttttcagGTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGTAAGTAAAACAAAGATATGACCAGATTCGATTGTTCAATTGATCTCCCAC

Basic information

species Zea mays
transcript GRMZM5G890665_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G890665_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os12g01580.1 (Oryza sativa), 3'ss of exon 11
gtagtaataaatgatccctttgttcatctctgatttatttatttattttcattttttaggagccaattcagtgaggaaaagggaatattcctgtactggaatcttgaacagaagcagcatgaagtcttaaattttaaaagcggtcttttatttttgtttttttttcagGTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGTAAGTAAAACAAAGATATGACCAGATTCGATTGTTCAATTGATCTCCCAC-----
                                                                        |  | || ||     | | |    || |  |     | |    |     ||||  |  | ||    || | | || |  ||||         ||||||||||||||||||||||||| |||||  | ||||     |||| || | | ||||||  ||| | ||    |      ||| ||  ||| |  ||  ||     
------------------------------------------------------------------------gtagtaatggatgattgcttaggatgtaggccaattctgttagaaagcaaagttgttgactt---gagtgattttgtggtttt---------tcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCT-----GGTCTGAAACTGAGTAAAGAAAAAAGATAGTGATGCATAATTATTAGATTAACATCTTACAGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211305855|gb|FL435228.1|FL435228
EST:     GCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGT
genomic: GCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAGgtagtaataa ... tttttttcagGTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGT
EST: gi|9731973|gb|BE510725.1|BE510725
EST:     GCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCCTGGAATGTTATCTTATCTGGTCAGATAGT
genomic: GCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAGgtagtaataa ... tttttttcagGTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGT
EST: gi|211340087|gb|FL449437.1|FL449437
EST:     GCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGT
genomic: GCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAGgtagtaataa ... tttttttcagGTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGT
EST: gi|211236851|gb|FL081712.1|FL081712
EST:     GCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGT
genomic: GCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAGgtagtaataa ... tttttttcagGTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagcatgaagtcttaaattttaaaagcggtcttttatttttgtttttttttcagGTTAGGGAGCAAAGGTGGACCTTGGAATGTTATCTTATCTGGTCAGATAGTAAGTAAAACAAAGATATGACCAGATTCGATTGTTCAATTGATCTCCCAC
                              tcttttatttttgttt  CT-rich tract
                              tcttttatttttgttt  TA-rich tract