1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attattggatagcttagcacatagagcggttgagatggcacctaatatagcatgttcaggttctagaatgtcttcgtaatctgcattattccccatatagTGCTGGGAACTACAATTCTCACGCTGGTGTACCCGGCTGCATTTACATGGTTCACTACCAG
species | Zea mays |
transcript | GRMZM5G890162_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
tatagcatgttcaggttctagaatgtcttcgtaatctgcattattccccatatagTGCTGGGAACTACAATTCTCACGCTGGTGTACCCGGCTGCATTTACATGGTTCACTACCAG
ttattcccc CT-rich tract
attatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattggatagcttagcacatagagcggttgagatggcacctaatatagcatgttcaggttctagaatgtcttcgtaatctgcattattccccatatagTGCTGGGAACTACAATTCTCACGCTGGTGTACCCGGCTGCATTTACATGGTTCACTACCAG
- - - - - - - - gcacata
- - - - - - - - - - - - -gcggttg
- - - - - - - - - - - - - - - - - - -gcaccta
- - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcatt