1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agttgatcatcctttacagccactaataattttgacttgtttttctcttaatagcattgtcttgtgagttgtgaagttcacagagtcatttggtttgtagGTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATGCTCAGGAAGGAATACCAGCACACCTGCAGATCAACTGGCTTAATGCTCT
species | Zea mays |
transcript | GRMZM5G860938_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAG GTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATGEST: gi|32802553|gb|CD954789.1|CD954789
genomic: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAGgtgcagtgaa ... tggtttgtagGTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATG
EST: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAG GTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATGEST: gi|32804318|gb|CD956554.1|CD956554
genomic: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAGgtgcagtgaa ... tggtttgtagGTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATG
EST: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAG GTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATGEST: gi|32789057|gb|CD941293.1|CD941293
genomic: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAGgtgcagtgaa ... tggtttgtagGTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATG
EST: TTTCTGAAGATTTTTGCGACATGTTTGGGACATCACACAGCCTTGATGAG GTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATGEST: gi|31351280|gb|CD435637.1|CD435637
genomic: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAGgtgcagtgaa ... tggtttgtagGTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATG
EST: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAG GTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATG
genomic: TTTCTGAAGATTTTTGCAACATGTTTGGGACATCACACAGCCTTGATGAGgtgcagtgaa ... tggtttgtagGTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATG
tcttaatagcattgtcttgtgagttgtgaagttcacagagtcatttggtttgtagGTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATGCTCAGGAAGGAATACCAGCACACCTGCAGATCAACTGGCTTAATGCTCT
tcttaat putative branch site (score: 55)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgatcatcctttacagccactaataattttgacttgtttttctcttaatagcattgtcttgtgagttgtgaagttcacagagtcatttggtttgtagGTACAAATCATTGGGGTGAAAGCAAAAGGCCACGACTTCAAAATAAGAATGCTCAGGAAGGAATACCAGCACACCTGCAGATCAACTGGCTTAATGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - gccacta