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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtttttgttgttggaaatctaaggctatttgatattacaaactccttgctacttcaaatggtttggtgagaactaacagtttccatacaaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGCAGCATCACTTAT

Basic information

species Zea mays
transcript GRMZM5G850355_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 9
--------------tatgtttttgttgttggaaat--ctaaggctatttgatattacaaactccttgc---tacttca-aatggtttggtgagaactaacagtttccatacaaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTT-CAAACAAGAATAGCAGCATCACTTAT
                || |   | ||||    |   | | |  |||   ||   ||      ||||     |   || ||    ||  ||| || | ||  ||||  ||||||    |||||||||| |||  ||||||||||||||||||||||||||||||||||| |||||||||||   || |  |||| |       | |  ||   |       
gtatgtcatacagacttgatcaagctgttttttactgccacgtatatgcaatgcaacttctgtcttgtgaacatgccataacaagttactgacaagttac--tttctgtacaaaatgcagAGTTCTAACCCCGGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAATTGTCTGTTGACATTTGATAGTTTACTGTTCTAAGTGACACTCTTGAGCC-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32942863|gb|CF047682.1|CF047682
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|4572854|gb|AI586503.1|AI586503
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|60355411|gb|DN222384.1|DN222384
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTAGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|32865823|gb|CF005505.1|CF005505
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|12967997|gb|BG264944.1|BG264944
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|211062081|gb|FL465317.1|FL465317
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACTGTGAGTTCAA                         AGTTCTAAGCCCATTAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|6020496|gb|AW065424.1|AW065424
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|14243343|gb|BG841010.2|BG841010
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTTTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|16918711|gb|BM073864.1|BM073864
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAAGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|211246869|gb|FL472890.1|FL472890
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|5525504|gb|AI861397.1|AI861397
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|32932932|gb|CF037744.1|CF037744
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|60359187|gb|DN226160.1|DN226160
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|5124519|gb|AI746255.1|AI746255
EST:     CAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: CAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|56382484|gb|CV985153.1|CV985153
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|5819357|gb|AI987563.1|AI987563
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|211253078|gb|FL452731.1|FL452731
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGMCCGTGAGTTCAA                         AGTTYTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|32931645|gb|CF036457.1|CF036457
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|32930042|gb|CF034854.1|CF034854
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|71331110|gb|DR802381.1|DR802381
EST:     CCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTTCAA                         -GTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAG
genomic: CCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTT-CAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAG
EST: gi|71331106|gb|DR802380.1|DR802380
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|5597152|gb|AI891355.1|AI891355
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGGCCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|211062082|gb|FL465318.1|FL465318
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|32868632|gb|CF008314.1|CF008314
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|5762225|gb|AI967273.1|AI967273
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|7138003|gb|AW499380.1|AW499380
EST:     GACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: GACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|213174021|gb|FM192687.1|FM192687
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|32908068|gb|CF012881.1|CF012881
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|60354522|gb|DN221495.1|DN221495
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|78021721|gb|DV490108.1|DV490108
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTTTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|32849719|gb|CD989400.1|CD989400
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|5108080|gb|AI739793.1|AI739793
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATTAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|9953259|gb|BE639842.1|BE639842
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|6031332|gb|AW076189.1|AW076189
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|211302508|gb|FL360538.1|FL360538
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGSTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|5895580|gb|AW036826.1|AW036826
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|60341905|gb|DN208878.1|DN208878
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|33093559|gb|CF053553.1|CF053553
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGCAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|6653876|gb|AW267281.1|AW267281
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATTAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAA                         AGTTCTAAGCCCATTAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 968

ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGCAGCATCACTTAT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 948

ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGCAGCATCACTTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1162

ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGCAGCATCACTTAT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 794

ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGACCGTGAGTTCAAgtaagttaca ... caaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGCAGCATCACTTAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttgctacttcaaatggtttggtgagaactaacagtttccatacaaataatagAGTTCTAAGCCCATCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGTTGTCTGTTGATGATTTACTGTTTCAAACAAGAATAGCAGCATCACTTAT
                            aactaac  putative branch site (score: 794)
                                          atacaaataata  TA-rich tract