1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttcgtctgtctgtcatacttctccttgtgtctgtctatcttcggtcctttacataattgttcggcattgctttggacgcagAACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTGGAG
species | Zea mays |
transcript | GRMZM5G846339_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTCCAGTCTTCTCAAGAGATGCATGGAGATGTGTGTGGCATATGATTCAG AACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTGEST: gi|44682283|gb|CK787331.1|CK787331
genomic: CTCCAGTCTTCTCAAGAGATGCATGGAGATGTGTGTGGCATATGATTCAGgttcgtctgt ... ttggacgcagAACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTG
EST: CTCCAGTCTTCTCAAGAGATGCATGGAGATGTGTGTGGCATATGATTCAG AACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTGEST: gi|211501409|gb|FL138835.1|FL138835
genomic: CTCCAGTCTTCTCAAGAGATGCATGGAGATGTGTGTGGCATATGATTCAGgttcgtctgt ... ttggacgcagAACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTG
EST: CTCCAGTCTTCTCAAGAGATGCATGGAGATGTGTGTGGCATATGATTCAG AACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTG
genomic: CTCCAGTCTTCTCAAGAGATGCATGGAGATGTGTGTGGCATATGATTCAGgttcgtctgt ... ttggacgcagAACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTG
gtgtctgtctatcttcggtcctttacataattgttcggcattgctttggacgcagAACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTGGAG
ttgcttt CT-rich tract
tttacataattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtctgtctgtcatacttctccttgtgtctgtctatcttcggtcctttacataattgttcggcattgctttggacgcagAACGACTTGGTTCATGGTTGGGGCTTGGATTTTGCGCTCAGGAAATGTGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG