1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtttcatgcctactcgtttcagcattattgtcgatgctgttacagccagctaaatgtgtatctccaagtttgttctttgtatatccaccagctcacatgcttctgccacttctgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGCGAAGAAGCAATGCTCTTATGTTGGATCGTGAGATGACCGTGCCTTGGG
species | Zea mays |
transcript | GRMZM5G835235_T04 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|4621641|gb|AI612474.1|AI612474
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|32859083|gb|CD998764.1|CD998764
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|5740140|gb|AI947830.1|AI947830
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|33092593|gb|CF052587.1|CF052587
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|211246876|gb|FL472897.1|FL472897
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|32865480|gb|CF005162.1|CF005162
genomic: TTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|32865498|gb|CF005180.1|CF005180
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|28986914|gb|CB351371.1|CB351371
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|4647428|gb|AI622503.1|AI622503
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TTCCCAAATGGCCGCTTCCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|21331244|gb|BQ486625.1|BQ486625
genomic: TT-CCAAATGGCCGCTT-CCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCGCCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|32928745|gb|CF033557.1|CF033557
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|60348494|gb|DN215467.1|DN215467
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|78544269|gb|DV621767.1|DV621767
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|22543122|gb|BU093560.1|BU093560
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGGCTCACG AATTGAAAGGAGTCCCAGCAGACATTGGTGCGAAATTGGGTCCAGAACATGEST: gi|60349422|gb|DN216395.1|DN216395
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAGATTGGTTCCAGAACATGEST: gi|60395660|gb|DN228530.1|DN228530
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAGATTGGTTCCAGAACATGEST: gi|211497820|gb|FL217204.1|FL217204
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: AAATGGCCGCTTCCTGCCACCCCTTTKCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|18172726|gb|BM348114.1|BM348114
genomic: AAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|32916889|gb|CF021701.1|CF021701
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|30087357|gb|CB885563.1|CB885563
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|16379449|gb|BI992951.1|BI992951
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|4621640|gb|AI612473.1|AI612473
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|29129738|gb|CB380442.1|CB380442
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGEST: gi|18170275|gb|BM340115.1|BM340115
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
EST: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACG AATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
genomic: TCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtttca ... tgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATG
gtttgttctttgtatatccaccagctcacatgcttctgccacttctgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGCGAAGAAGCAATGCTCTTATGTTGGATCGTGAGATGACCGTGCCTTGGG
agctcac putative branch site (score: 3)
cttctgccacttct putative PPT
tttgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcatgcctactcgtttcagcattattgtcgatgctgttacagccagctaaatgtgtatctccaagtttgttctttgtatatccaccagctcacatgcttctgccacttctgttctgcagAATTGAAAGGAGTCCCAGCAGACATTGTTGCGAAATTGGTTCCAGAACATGCGAAGAAGCAATGCTCTTATGTTGGATCGTGAGATGACCGTGCCTTGGG
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