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gtatgttgtgaaaaacaatctggttaatgacacgttttttcattaattttgtggattctaacttgttctatataatgcagGATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAAAGTTCTCTTGCTCCTCAATTGCTAGAACTCATGAAGATGCTTTTCAATG
species | Zea mays |
transcript | GRMZM5G831712_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTAAAACCAATTTTCGGAAGCAGCCTGNGAGATTTTACCCACTTGATGTT GATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAAEST: gi|6021377|gb|AW066305.1|AW066305
genomic: GTAAAACCAATTTTCGGAAGCAGCCTGGGAGATTTTACCCACTTGATGTTgtatgttgtg ... tataatgcagGATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAA
EST: GTAAAACCAATTTTCGGAAGCAGCCTGGGAGATTTTACCCACTTGATGTT GATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAAEST: gi|60344927|gb|DN211900.1|DN211900
genomic: GTAAAACCAATTTTCGGAAGCAGCCTGGGAGATTTTACCCACTTGATGTTgtatgttgtg ... tataatgcagGATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAA
EST: GTAAAACCAATTTTCGGAAGCAGCCTGGGAGATTTTACCCACTTGATGTT GATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAA
genomic: GTAAAACCAATTTTCGGAAGCAGCCTGGGAGATTTTACCCACTTGATGTTgtatgttgtg ... tataatgcagGATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAA
aatgacacgttttttcattaattttgtggattctaacttgttctatataatgcagGATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAAAGTTCTCTTGCTCCTCAATTGCTAGAACTCATGAAGATGCTTTTCAATG
ttctaac putative branch site (score: 129)
ttttttcattaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgtgaaaaacaatctggttaatgacacgttttttcattaattttgtggattctaacttgttctatataatgcagGATTATGGTGTTAAGAAAGCACCAAAACGGAAAGATATCAGTGAAATGAAAAGTTCTCTTGCTCCTCAATTGCTAGAACTCATGAAGATGCTTTTCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG