1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aggtagtacattggcccttttatgattgcatgcttatgaacgtgtctatttagctgtttttgcaatttatacataaatgatagttgttttttctaatcagGAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTGAGGCCACCACACCCTACATCATCTGATGCATCATATTACTATCCTAATA
species | Zea mays |
transcript | GRMZM5G829738_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AATCGACTTTGAACCCTAATGCTAAG GAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTGEST: gi|116815752|gb|EC858445.1|EC858445
genomic: AATCGACTTTGAACCCTAATGCTAAGgtctgactga ... ttctaatcagGAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTG
EST: CTCTTACTGCTGAAAAATCGACTTTGAACCCTAATGCTAAG GAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTGEST: gi|60344962|gb|DN211935.1|DN211935
genomic: CTCTTACCGCTGAAAAATCGACTTTGAACCCTAATGCTAAGgtctgactga ... ttctaatcagGAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTG
EST: GACTTTG-ACCCTAATGCTAAG GAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTGEST: gi|116826672|gb|EC870479.1|EC870479
genomic: GACTTTGAACCCTAATGCTAAGgtctgactga ... ttctaatcagGAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTG
EST: CTCTTA-CGCTGAAAAAT--ACTTTGAA-CCTAATGCTAAG GACATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCCGTCAGCATCTCEST: gi|74234144|gb|DT642058.1|DT642058
genomic: CTCTTACCGCTGAAAAATCGACTTTGAACCCTAATGCTAAGgtctgactga ... ttctaatcagGA-ATTCAAGCTAAATCCTAATGCCAAGAGTTTCACT-CCGTCAGCATCTC
EST: CAATAGGATCTCTTACCGCTGAAAAATCGACTTTGAACCCTAATGCTAAG GAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTG
genomic: CAATAGGATCTCTTACCGCTGAAAAATCGACTTTGAACCCTAATGCTAAGgtctgactga ... ttctaatcagGAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTG
ctatttagctgtttttgcaatttatacataaatgatagttgttttttctaatcagGAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTGAGGCCACCACACCCTACATCATCTGATGCATCATATTACTATCCTAATA
ttgttttttct CT-rich tract
aatttatacataaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtagtacattggcccttttatgattgcatgcttatgaacgtgtctatttagctgtttttgcaatttatacataaatgatagttgttttttctaatcagGAATTCAAGCTAAATCCTAATGCCAAGAGTTTCACTCCGTCAGCATCTCTGAGGCCACCACACCCTACATCATCTGATGCATCATATTACTATCCTAATA
- - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgttt