1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttgttgtttttgcaaacctggagctatgcgatattacaaagtccttgctacattcaaatggtttgctgagaactaacagtttttccatacaaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCTGTCTGTTGATGATACTAGTTCAGACAACAATAGCAGCGTCACTTATGA
species | Zea mays |
transcript | GRMZM5G824831_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCEST: gi|211269953|gb|FL444406.1|FL444406
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCEST: gi|6952542|gb|AW424610.1|AW424610
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGCAATTATTCGAGCTGATCGTGAGTTCAA AGTTCTAAGCCCAGEST: gi|148973074|gb|EE024136.2|EE024136
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAG
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCEST: gi|78112696|gb|DV531090.1|DV531090
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTTTTGGAAGAGGGGGAGTAAGCEST: gi|5268558|gb|AI770522.1|AI770522
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGCTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCEST: gi|211149323|gb|FL312581.1|FL312581
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCEST: gi|32830197|gb|CD969875.1|CD969875
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCEST: gi|6194486|gb|AW146590.1|AW146590
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCEST: gi|67024880|gb|CO453629.1|CO453629
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCEST: gi|211321302|gb|FL273340.1|FL273340
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
EST: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAA AGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
genomic: TCCTCCAACAACATTGAAATCGGAATTATTCGAGCTGATCGTGAGTTCAAgtaagttaca ... caaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGC
ttgctacattcaaatggtttgctgagaactaacagtttttccatacaaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCTGTCTGTTGATGATACTAGTTCAGACAACAATAGCAGCGTCACTTATGA
aactaac putative branch site (score: 1)
atacaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttgtttttgcaaacctggagctatgcgatattacaaagtccttgctacattcaaatggtttgctgagaactaacagtttttccatacaaaatacagAGTTTTAAGCCCAGCAGAGATCAAGGATTTCTTGGAAGAGGTGGAGTAAGCTGTCTGTTGATGATACTAGTTCAGACAACAATAGCAGCGTCACTTATGA
- tgttgtt
- - - - - - - - - ctggagc
- - - - - - - - - - - - - - - - - - - - - tccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - -cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaactaa