1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cttgtgttgggtttgggtagtaacttagtgtgatgagaaattttacagatatttgttttttatttgttcctactaacaacatttggtttttagattgcagCTATATCTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCAGTGAGAACGCCAATGGAAGTCCTGAGTGGAGATCATTTGATATGCATTC
species | Zea mays |
transcript | GRMZM5G817551_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTGATTGCAGEST: gi|45847408|gb|CN071351.1|CN071351
genomic: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGC----T---Ggtacatgctt ... taga
EST: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTG CTATATCTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCAEST: gi|14701429|gb|BI233847.1|BI233847
genomic: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTGgtacatgctt ... tagattgcagCTATATCTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCA
EST: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTG CTATATCTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCAEST: gi|101388186|gb|EB816107.1|EB816107
genomic: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTGgtacatgctt ... tagattgcagCTATATCTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCA
EST: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTGATTGCAGEST: gi|71314000|gb|DR793612.1|DR793612
genomic: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGC----T---Ggtacatgctt ... taga
EST: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTG CTATATTTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCAEST: gi|60350439|gb|DN217412.1|DN217412
genomic: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTGgtacatgctt ... tagattgcagCTATATCTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCA
EST: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTGATTGCAGEST: gi|71769295|gb|DR967232.1|DR967232
genomic: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGC----T---Ggtacatgctt ... taga
EST: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGCTGATTGCAG
genomic: TTCTTATATGTGACGATGGATCCATCAGATGGAATCGACTGGAAAGGC----T---Ggtacatgctt ... taga
cagatatttgttttttatttgttcctactaacaacatttggtttttagattgcagCTATATCTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCAGTGAGAACGCCAATGGAAGTCCTGAGTGGAGATCATTTGATATGCATTC
tactaac putative branch site (score: 23)
ttttt putative PPT
atttgttttttatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtgttgggtttgggtagtaacttagtgtgatgagaaattttacagatatttgttttttatttgttcctactaacaacatttggtttttagattgcagCTATATCTGAACAGTCATCAGAATCTTCAAGCGCATCAGGAGCTGACTCCAGTGAGAACGCCAATGGAAGTCCTGAGTGGAGATCATTTGATATGCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- tgtgttg
- - - - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaca