1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttggtaaaacgttgattttcatgtgtttgcacatagaagattttgactcttggtgaactgtcggcagCTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAGACAG
species | Zea mays |
transcript | GRMZM2G477146_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GACATTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTAAAG CTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAGEST: gi|78106036|gb|DV524454.1|DV524454
genomic: GACATTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTAAAGgttggtaaaa ... ctgtcggcagCTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAG
EST: GACATTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTAAAG CTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAGEST: gi|32810384|gb|CD962618.1|CD962618
genomic: GACATTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTAAAGgttggtaaaa ... ctgtcggcagCTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAG
EST: TCCTTGCTAGCACCCGATGACAGTAAAG CTGATACGAAAGATGGTTCAAGCACCGCCGAGGACTCCATAATTGACATAG
genomic: TCCTTGCTAGCACCCGATGACAGTAAAGgttggtaaaa ... ctgtcggcagCTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAG
tgattttcatgtgtttgcacatagaagattttgactcttggtgaactgtcggcagCTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAGACAG
ttttgac putative branch site (score: 56)
aagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtaaaacgttgattttcatgtgtttgcacatagaagattttgactcttggtgaactgtcggcagCTGATACGAAAGATGGTTCAAGCACCGCCGATGACTCCATAATTGACATAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG