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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttaatatatgcaagaaagcttcaaataagcttaattcggtagaatcattttcttatgagtttgcttttcttcatgtcagGTTCAATCTGACATCAGAGAAAAATGAAGAACAAGCTGGGTCTGAAAGTGATGATGAAGGGAATAGCAGACCTTCCTTTTTGTCTGTGAAAAAGACTGCT

Basic information

species Zea mays
transcript GRMZM2G472991_T04
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26456479|gb|CA828062.1|CA828062
EST:     GTTTTTTGACCGAGACATTGAATGTATCTACAAGTTTTTTAACAAAAG        
genomic: TGAATGTATCTACAAGTTCTTTAACAAAAGgttttaatat ... ttcatgtcagG
EST: gi|33094905|gb|CF054899.1|CF054899
EST:     GTTTTTTGACCGAGACATTGAATGTATCTACAAGTTCTTTAACAAAAG        
genomic: TGAATGTATCTACAAGTTCTTTAACAAAAGgttttaatat ... ttcatgtcagG
EST: gi|20301471|gb|BQ164414.1|BQ164414
EST:     GTTTTTTGACCGAGACATTGAATGTATCTACAAGTTTTTTAACAAAAG        
genomic: TGAATGTATCTACAAGTTCTTTAACAAAAGgttttaatat ... ttcatgtcagG
EST: gi|33095027|gb|CF055021.1|CF055021
EST:     GTTTTTTGACCGAGACATTGAATGTATCTACAAGTTCTTTAACAAAAG        
genomic: TGAATGTATCTACAAGTTCTTTAACAAAAGgttttaatat ... ttcatgtcagG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagcttaattcggtagaatcattttcttatgagtttgcttttcttcatgtcagGTTCAATCTGACATCAGAGAAAAATGAAGAACAAGCTGGGTCTGAAAGTGATGATGAAGGGAATAGCAGACCTTCCTTTTTGTCTGTGAAAAAGACTGCT
    gcttaat  putative branch site (score: 4)
                                   tttgcttttcttcat  putative PPT
                  aatcattttcttat  TA-rich tract