1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctatataatcaaaagcctctggctaacagaaatgagtaatcagagttatctccaacaaacataacttaaattgccatctgttaccttggtgcatgtgcagGTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGTGTTTGGGTGGCTGGGAAGGAGTATCCCCTCGCCCGAGTTCACTTCCTCT
species | Zea mays |
transcript | GRMZM2G464000_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAG GTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGTEST: gi|78077937|gb|DV506359.1|DV506359
genomic: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAGgtatttgcgc ... gcatgtgcagGTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGT
EST: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAG GTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGTEST: gi|22542076|gb|BU092514.1|BU092514
genomic: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAGgtatttgcgc ... gcatgtgcagGTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGT
EST: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAG GTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGTEST: gi|211146178|gb|FK958442.1|FK958442
genomic: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAGgtatttgcgc ... gcatgtgcagGTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGT
EST: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAG GTGTTGCAGGATAACCTAGAATGGGAGGATGTGCAGTGGTCGCAGACCGGTEST: gi|78077940|gb|DV506360.1|DV506360
genomic: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAGgtatttgcgc ... gcatgtgcagGTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGT
EST: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAG GTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGT
genomic: AAAGTGCCATGCGCTCCACTGGTATCCCACTACCAGCAGATCAGCTCGAGgtatttgcgc ... gcatgtgcagGTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGT
ttatctccaacaaacataacttaaattgccatctgttaccttggtgcatgtgcagGTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGTGTTTGGGTGGCTGGGAAGGAGTATCCCCTCGCCCGAGTTCACTTCCTCT
acataac putative branch site (score: 3)
aaacataacttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatataatcaaaagcctctggctaacagaaatgagtaatcagagttatctccaacaaacataacttaaattgccatctgttaccttggtgcatgtgcagGTGTTGCAGGATAACCTAGAATGGGAGGACGTGCAGTGGTCGCAGACCGGTGTTTGGGTGGCTGGGAAGGAGTATCCCCTCGCCCGAGTTCACTTCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG