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gtatccatttaaaattttacgttatttgattaagctatataaagaatttttattctcgcaccttgatgtccagcttgtctcatgcttaattatgggttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGAAATATATATCAAGAAGAGTCGTTGCTATATTTCTTGAAGTACTCTCTTT
species | Zea mays |
transcript | GRMZM2G452580_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGGGTTTACTTGCG-CC- C-GGTCAGCGTGCCCCAAA-GATGCTGTAGGCAATGATGATGGGNNTTCTTEST: gi|211320220|gb|FL223755.1|FL223755
genomic: GGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGG--TTCTT
EST: GGTCAATACAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCG CAGGTCAGCGTGCCCCAAATGATGTTGTAGGCAATGATGATGGGTTCTTGAEST: gi|91048757|gb|EB159175.1|EB159175
genomic: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA
EST: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCG-CC- C-GGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGAEST: gi|32805129|gb|CD957365.1|CD957365
genomic: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA
EST: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCG CAGGTCAGCGTGCCCCAAATGATGCTGCAGGCAATGACGATGGGTTCTTGA
genomic: GGTCAATGCAGAACAAGGTTCCCTGATAAATGGGGGTTTACTTGCGCCCGgtatccattt ... ttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGA
attctcgcaccttgatgtccagcttgtctcatgcttaattatgggttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGAAATATATATCAAGAAGAGTCGTTGCTATATTTCTTGAAGTACTCTCTTT
gcttaat putative branch site (score: 4)
ttaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccatttaaaattttacgttatttgattaagctatataaagaatttttattctcgcaccttgatgtccagcttgtctcatgcttaattatgggttcaaaccagCAGGTCAGCGTGCCCCAAATGATGCTGTAGGCAATGATGATGGGTTCTTGAAATATATATCAAGAAGAGTCGTTGCTATATTTCTTGAAGTACTCTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG