ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

gttttggacggatgatttcggcgatctcatatctctgtcgttttgtggcgagacatgacattggtggtgttctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAAGGCATGTTCACTTTCTATGATACAACTAAAGCGACTCTAAATGTGTACC

Basic information

species	Zea mays
transcript	GRMZM2G451366_T01
intron #	11
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G451366_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os08g01180.1 (Oryza sativa), 3'ss of exon 11

-------------gttttggacggatgatttcggcgatctcatatc-tctgtcgttttgtggcgagacatgacattggtggtgttctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAAGGCATGTTCACTTTCTATGATACAACTAAAGCGACTCTAAATGTGTACC
              | |   |  ||  ||| |  | |  |||  |  |  || ||||| | || |  |||||||||  |  ||  ||| |||||||||| || ||||||||  ||||||| || |||||||| ||||  ||||| ||||||||||||||||||||| |||| || || ||||||||||| || |
gttcgtttgccttctatcaaatagagtatt-catctagttcacctagttcgtagttttcttgcaaaccatgacatt--tcatgccctgttgcagGAACTATCTGAGCACACTGCTGATGTCCACGTTCAAAGCGATGTTCTTGATGGCATGTTCACTTTCTATGATGCAACAAAGGCAACTCTAAATGTATATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|60354551|gb|DN221524.1|DN221524

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32841613|gb|CD981294.1|CD981294

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32809380|gb|CD961614.1|CD961614

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|71440388|gb|DR821438.1|DR821438

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32840746|gb|CD980427.1|CD980427

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|149109482|gb|EE293326.2|EE293326

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|89252033|gb|DY623819.1|DY623819

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32841252|gb|CD980933.1|CD980933

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32839985|gb|CD979666.1|CD979666

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|60356118|gb|DN223091.1|DN223091

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32840986|gb|CD980667.1|CD980667

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTT
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTT

EST: gi|17930706|gb|BM267666.1|BM267666

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32841145|gb|CD980826.1|CD980826

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTG
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTG

EST: gi|32840762|gb|CD980443.1|CD980443

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCAT
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCAT

EST: gi|78123288|gb|DV541672.1|DV541672

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|60347494|gb|DN214467.1|DN214467

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32826642|gb|CD966320.1|CD966320

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|71326873|gb|DR800095.1|DR800095

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTTTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32827213|gb|CD966891.1|CD966891

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|211499697|gb|FL406840.1|FL406840

EST:     TACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|32841526|gb|CD981207.1|CD981207

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTC
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTC

EST: gi|32945502|gb|CF050321.1|CF050321

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTAGTACGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACT-GTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGA

EST: gi|32794438|gb|CD946674.1|CD946674

EST:     TCGCACCGTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGCGATGCGCTTGAC
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

EST: gi|60357371|gb|DN224344.1|DN224344

EST:     TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAG                         GAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA
genomic: TCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 109

TCCTCGCTACGTCCGGTCCTGGTTGGATCTTTTGTCACGGACACCACGAGTCGCACCTTTTCTACAGAAGAATGATCCCTTCATAGCAGCGCTGAAAAAGgttttggacg ... tctggtgcagGAACTGTCCGAGCACACGTCTGATGTGCATGTTCAAAGTGATGCGCTTGAAGGCATGTTCACTTTCTATGATACAACTAAAGCGACTCTAAATGTGTACC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 81

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 96