1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgcagattgtacctctgtactcgattcatcctttcctgagctgcattttttttgtttatgaaaatacagtaggagccctggtaattcactaaagaagaaagagtaaaattaaagaaagaagggaaaccacacagctaatatgtgttcccaaatataatgattctgcatttcttaaatttgaaatgctttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTCTGGAGGTTGGGTCAGATCTGTACTCAGCAATCATCGACGATAAGTTGT
species | Zea mays |
transcript | GRMZM2G422938_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|28566570|gb|CB278218.1|CB278218
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCEST: gi|213188366|gb|FM182148.1|FM182148
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGC
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|50327383|gb|CO522509.1|CO522509
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|211528351|gb|FL435370.1|FL435370
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|31612367|gb|CD568989.1|CD568989
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|8665543|gb|BE186359.1|BE186359
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: CTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|78022116|gb|DV490503.1|DV490503
genomic: CTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|31405731|gb|CD484463.1|CD484463
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|50331880|gb|CO527006.1|CO527006
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|14244284|gb|BG842300.2|BG842300
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|5762085|gb|AI967133.1|AI967133
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|45568059|gb|CK985881.1|CK985881
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|148947021|gb|EC892318.2|EC892318
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|211093394|gb|FL430975.1|FL430975
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTSCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|4573048|gb|AI586697.1|AI586697
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: CCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|37394414|gb|CF634481.1|CF634481
genomic: CCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTEST: gi|211325068|gb|FL358359.1|FL358359
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
EST: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTG ATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
genomic: ATCACTTCTATGACCAGGGTGTGCCTCTCCATGACGAAATTGCTAAACTGgtacgcagat ... ttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATT
tgttcccaaatataatgattctgcatttcttaaatttgaaatgctttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTCTGGAGGTTGGGTCAGATCTGTACTCAGCAATCATCGACGATAAGTTGT
ctttttaccc CT-rich tract
ttaaatttgaaatgct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcagattgtacctctgtactcgattcatcctttcctgagctgcattttttttgtttatgaaaatacagtaggagccctggtaattcactaaagaagaaagagtaaaattaaagaaagaagggaaaccacacagctaatatgtgttcccaaatataatgattctgcatttcttaaatttgaaatgctttttacccagATGCAAATCAGAAAATGCCAAGATATACATAGCCGTTCATCAATCAAAATTCTGGAGGTTGGGTCAGATCTGTACTCAGCAATCATCGACGATAAGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG