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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgctatcacagaactcgttcatctcgttgcatcagcgtgttagtttttgcattgctgtgcatctgtgctctttatgattctgcctgttgtttttgaagcccatgttgctgtctatcagaaaactgaacagaattcgtccttgtttgtcccccagATATCGTACCTTCGAAGCTTGGGGTGCACCATCACTCCGACTTCTCGCTTACACGCATCACATCTTATCGAAAAGTACAAATCGCTCTAACTTGGTTGAA

Basic information

species Zea mays
transcript GRMZM2G421655_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421655_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os07g30980.1 (Oryza sativa), 3'ss of exon 30
gtctgctatcacagaactcgttcatctcgttgcatcagcgtgttagtttttgcattgctgtgcatctgtgctctttatgattctgcctgttgtttttgaagcccatgttgctgtctatcagaaaactgaacagaattcgtccttgtttgtcccccagATATCGTACCTTCGAAGCTTGGGGTGCACCATCACTCCGACTTCTCGCTTACACGCATCACATCTTATCGAAAAGTACAAATCGCTCTAACTTGGTTGAA
                                              |||| |||       |  |   || | |   |   | |   || | ||       ||    | | |    ||   || |||   |     || |||||   ||     |||||||||||||| || | | |||||||||||||||| || || |||||| | ||||| || ||||||||||| ||||||||||| || | ||||       
--------------------------------------------ttttttggcagaaaatagttttactggtttccttcgctttatatgctattccca---cctgaatggattatcattcaaacactttgc-----tcatcctttggtg-----cagATATCGTACCTCCGGAACCTGGGGTGCACCATCACACCCACGTCTCGCCTGCACGCGTCGCATCTTATCGAGAAGTACAAATCTCTATGACTTTTCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211145564|gb|FL475598.1|FL475598
EST:     AGCAGAGGATTGAGAACTCTATGGGTTCGTCAGAACCCACAGCCAAGCAG                         ATATCGTACCTTCGAAGCTTGGGGTGCACCATCACTCCGACTTCTCGCTTA
genomic: AGCAGAGGATTGAGAACTCTATGGGTTCGTCAGAACCCACAGCCAAGCAGgtctgctatc ... tgtcccccagATATCGTACCTTCGAAGCTTGGGGTGCACCATCACTCCGACTTCTCGCTTA
EST: gi|67025795|gb|CO454544.1|CO454544
EST:     -GCAGAGGATTGAGA-CTCTATGGGGTCGTCAGAACC-ACAGCCNAGCAG                         ATATCGTACCTTCGAAGCTTTGGGTGCAC-ATCACTCCGACTTCTCGCTTA
genomic: AGCAGAGGATTGAGAACTCTATGGGTTCGTCAGAACCCACAGCCAAGCAGgtctgctatc ... tgtcccccagATATCGTACCTTCGAAGCTTGGGGTGCACCATCACTCCGACTTCTCGCTTA
EST: gi|211145563|gb|FL475597.1|FL475597
EST:     AGCAGAGGATTGAGAACTCTATGGGTTTGTCAGAACCCACAGCCAAGCAG                         ATGTGGTACCTTCGAAGCTTGGGGTGCACCATCATTCCGACTTCTCGCTTA
genomic: AGCAGAGGATTGAGAACTCTATGGGTTCGTCAGAACCCACAGCCAAGCAGgtctgctatc ... tgtcccccagATATCGTACCTTCGAAGCTTGGGGTGCACCATCACTCCGACTTCTCGCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgttgctgtctatcagaaaactgaacagaattcgtccttgtttgtcccccagATATCGTACCTTCGAAGCTTGGGGTGCACCATCACTCCGACTTCTCGCTTACACGCATCACATCTTATCGAAAAGTACAAATCGCTCTAACTTGGTTGAA
                                     tccttgtttgtccccc  CT-rich tract