Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgaagttaataaattgtgatcgcctgttttttcagaaatattgaggtgtataccttatctgagcatttgcttttcaacttgtatataattttggtgcagAGCAAGGGCTAGTGAGCTTATTAAAGCTTTAGATGGACAGGATTGTCCCCGTCCAATCTCTTGTTGTCTATTTGCAAACAAG

Basic information

species Zea mays
transcript GRMZM2G417217_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G417217_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g38250.1 (Oryza sativa), 3'ss of exon 9
gtgaagttaataaattgtgatcgcctgttttttcagaaatattgaggtgtataccttatctgagcatttgctt--ttcaacttgta----tataattttggtgcagAGCAAGGGCTAGTGAGCTTATTAAAGCTTTAGATGGACAGGATTGTCCCCGTCCAATCTCTTGTTGTCTATTTGCAAACAAG
      ||      | || ||    |  ||||| |    | || | |||  ||  | || |||  ||||  ||  ||  |  | ||    || |  |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||  ||||  || ||||||||||||||
------ttgccttttggtcatatagttgtttttgaagggttttaaagtgagtatttgatttgaatatttatttaatttgaaatctacccctaaacatttgttgcagAGCAAGGGCTGGTGAGCTTATTAAAGCTTTGGATGGACAGGATTGCCCACGTCCAATTGCTTGCCGTATATTTGCAAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtataccttatctgagcatttgcttttcaacttgtatataattttggtgcagAGCAAGGGCTAGTGAGCTTATTAAAGCTTTAGATGGACAGGATTGTCCCCGTCCAATCTCTTGTTGTCTATTTGCAAACAAG
                          ttttcaacttgtatat  TA-rich tract