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gtggctaccctctgaacatacaaaatatttgttttgagcacctcacagtgtatctatgatttttgcatctgttctgtacatctgcgatttatgttatgttatgtgcttagGCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGTGACAGCAAATCCTATAAAGCACCAGCTATTTTATGCTAGCTGCCAG
species | Zea mays |
transcript | GRMZM2G415846_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTAAATATAGTTGTTTCTGTACTCAAAAG GCTAGTGGACTGGTGTGATTATTATTGTGEST: gi|101383979|gb|EB814044.1|EB814044
genomic: GTAAATATAGTTGTTTCTGTACTCAAAAGgtggctaccc ... atgtgcttagGCTAGTGGACTGGTGTGATTATTATTGTG
EST: TCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAG GCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGTEST: gi|93283859|gb|EB676123.1|EB676123
genomic: TCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAGgtggctaccc ... atgtgcttagGCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGT
EST: TCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAG GCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGTEST: gi|21843184|gb|BQ703750.1|BQ703750
genomic: TCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAGgtggctaccc ... atgtgcttagGCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGT
EST: TCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAG GCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGTEST: gi|26457293|gb|CA828876.1|CA828876
genomic: TCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAGgtggctaccc ... atgtgcttagGCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGT
EST: TCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAG GCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGT
genomic: TCCCGGGCAAGGTTCATTTCCGTAAATATAGTTGTTTCTGTACTCAAAAGgtggctaccc ... atgtgcttagGCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGT
atgatttttgcatctgttctgtacatctgcgatttatgttatgttatgtgcttagGCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGTGACAGCAAATCCTATAAAGCACCAGCTATTTTATGCTAGCTGCCAG
atttatgttatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggctaccctctgaacatacaaaatatttgttttgagcacctcacagtgtatctatgatttttgcatctgttctgtacatctgcgatttatgttatgttatgtgcttagGCTAGTGGACTGGTGTGATTATTATTGTGGCCATCAGCTGGACAATGGGGTGACAGCAAATCCTATAAAGCACCAGCTATTTTATGCTAGCTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC