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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtggtttcattaacctcagttacagagttacttttacagcgttgagtgcaacctttatgttcttcatactcgcagGGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAG

Basic information

species Zea mays
transcript GRMZM2G408305_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408305_T02 (Zea mays), 3'ss of exon 11
lower sequence: PP1S143_122V6.1 (Physcomitrella patens), 3'ss of exon 9
---------------gtaagttgt-ggtttcattaacctcagttacagagttacttttacagcgtt---gagtgcaacctttatgttcttcatactcgcagGGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAG
               | | |||   || ||     |  |   || ||    |     ||| | |||    | | | ||| ||   ||||   | |    |||| |||| |||||| |  |||||| |  |||||||||| ||||||||||||||  | |||||||||||| |||  ||     |    | |
aatatgaaccctacgggatgttaaaggctttccgtatatttctttcattacttaccatactgtgttttgaacttcgaccattgc-ttctctgtccatatagGGATTTGAATTGGAATTTAGTGAATTGCGAGAGTACACACATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211006824|gb|FL318409.1|FL318409
EST:     GCAAGAATTGAAGCAATATTGCCTCCTTTTATTGAGGCTTCTATTTCT                         GGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTT
genomic: GCAAGAATTGAAGCAATATTGCCTCCTTTTATTGAGGCTTCTATTTCTgtaagttgtg ... atactcgcagGGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTT
EST: gi|211090668|gb|FL308863.1|FL308863
EST:     GCAAGAATTGAAGCAATATTGCCTCCTTTTATTGAGGCTTCTATTTCT                         GGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTT
genomic: GCAAGAATTGAAGCAATATTGCCTCCTTTTATTGAGGCTTCTATTTCTgtaagttgtg ... atactcgcagGGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagagttacttttacagcgttgagtgcaacctttatgttcttcatactcgcagGGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAG
                                       ttcttcat  CT-rich tract
       ttactttta  TA-rich tract