1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaatgtctttccccccctgctgtgaatgcaagtcacatgctctatatttgtcattacaatgctaaaagtaggaacaactgtaatcagATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAAC
species | Zea mays |
transcript | GRMZM2G399073_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|19822479|gb|BQ048503.1|BQ048503
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaatgtctt ... ctgtaatcagATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCEST: gi|211478285|gb|FL245118.1|FL245118
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaatgtctt ... ctgtaatcagATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCC
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|211354990|gb|FL245115.1|FL245115
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaatgtctt ... ctgtaatcagATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaatgtctt ... ctgtaatcagATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
tcacatgctctatatttgtcattacaatgctaaaagtaggaacaactgtaatcagATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAAC
tgctaaa putative branch site (score: 2)
tatatttgtcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtctttccccccctgctgtgaatgcaagtcacatgctctatatttgtcattacaatgctaaaagtaggaacaactgtaatcagATGAAGAGAAAAATGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTGGAATGAGTTTGGCAAATCAATCAAGCTGGGTATCATTGAAGACGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA