1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtactttcctctctgatgtactctaatcaattacgcatcagtttggccaactgacatcttttaaatggtatgacttttgaaaaagttctaatcattgcaatccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTCTTCAAGGACTTCTTCGGTATGATCCTAATGAGCGCCTGAAAGCACATG
species | Zea mays |
transcript | GRMZM2G386991_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|32930586|gb|CF035398.1|CF035398
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|113702476|gb|EE679980.1|EE679980
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|6021499|gb|AW066427.1|AW066427
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|211073306|gb|FL473576.1|FL473576
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|19822133|gb|BQ048157.1|BQ048157
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|19769731|gb|BQ034452.1|BQ034452
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|19769965|gb|BQ034686.1|BQ034686
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|31997648|gb|CD661693.1|CD661693
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|211122243|gb|FL474055.1|FL474055
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|19822056|gb|BQ048080.1|BQ048080
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|15426933|gb|BI542755.1|BI542755
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|15352988|gb|BI502599.1|BI502599
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|14245195|gb|BG873777.1|BG873777
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|60343108|gb|DN210081.1|DN210081
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|60354602|gb|DN221575.1|DN221575
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|113672090|gb|DW823682.1|DW823682
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: GGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|113556745|gb|DW733538.1|DW733538
genomic: GGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|45847998|gb|CN071941.1|CN071941
genomic: CTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTEST: gi|6127284|gb|AW129809.1|AW129809
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
EST: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAG AACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
genomic: CGGCCTCACGAGAGAGCATGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGgtactttcct ... atccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTT
catcttttaaatggtatgacttttgaaaaagttctaatcattgcaatccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTCTTCAAGGACTTCTTCGGTATGATCCTAATGAGCGCCTGAAAGCACATG
ttctaat putative branch site (score: 142)
ttttgaaaaa TA-rich tract