Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatgggcttcaagtattaaacttcttgaatgtacattactacattggtttgtgattgcatgtgcttattctaacaaagagcactctttttacgagttaacttttttctatttctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG

Basic information

species Zea mays
transcript GRMZM2G381933_T03
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os01g15490.3 (Oryza sativa), 3'ss of exon 11
gtaacatgggcttcaagtatta--aacttcttgaatgtacattactacattggtttgtgattgcatgtgcttattctaacaaagagcactctttttacgagttaacttttttctatttctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG
||||  |||    ||| ||  |  || ||||||||| |  | | ||               |||||||  |||||||| || || |||  ||          | | ||   || |  ||| |  ||||||||   |||||||||||||||||| |||||| |||||||||||| |||||| |||||||||
gtaatctggttcgcaaatacaattaaattcttgaatatctagtgctg--------------tgcatgt--ttattctagcatagtgcaagctgca-gtattatcatttaactccacatctctttcagATGGCTTTGTTGCCAGAAGGTATTACGGAATTATTGCATCACAAAATGCTACCGTTGCCATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285805|gb|CF075600.1|CF075600
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|33097429|gb|CF057389.1|CF057389
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|60359540|gb|DN226513.1|DN226513
EST:     ATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|60396268|gb|DN229137.1|DN229137
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|60351624|gb|DN218597.1|DN218597
EST:     ACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|60394781|gb|DN227651.1|DN227651
EST:     TCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: TCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|71767359|gb|DR965296.1|DR965296
EST:     ATTACTTTAGTCATCTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|33285569|gb|CF075364.1|CF075364
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACACTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|71767360|gb|DR965297.1|DR965297
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|211076372|gb|FL154532.1|FL154532
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACTGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|78087486|gb|DV515879.1|DV515879
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|8516501|gb|BE123226.1|BE123226
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|67023704|gb|CO452453.1|CO452453
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACTGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctaacaaagagcactctttttacgagttaacttttttctatttctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG
                             ttaacttttttctatt  CT-rich tract
                             ttaacttttttctatt  TA-rich tract