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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatgggcttcaagtattaaacttcttgaatgtacattactacattggtttgtgattgcatgtgcttattctaacaaagagcactctttttacgagttaacttttttctatttctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG

Basic information

species Zea mays
transcript GRMZM2G381933_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os01g15490.3 (Oryza sativa), 3'ss of exon 11
gtaacatgggcttcaagtatta--aacttcttgaatgtacattactacattggtttgtgattgcatgtgcttattctaacaaagagcactctttttacgagttaacttttttctatttctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG
||||  |||    ||| ||  |  || ||||||||| |  | | ||               |||||||  |||||||| || || |||  ||          | | ||   || |  ||| |  ||||||||   |||||||||||||||||| |||||| |||||||||||| |||||| |||||||||
gtaatctggttcgcaaatacaattaaattcttgaatatctagtgctg--------------tgcatgt--ttattctagcatagtgcaagctgca-gtattatcatttaactccacatctctttcagATGGCTTTGTTGCCAGAAGGTATTACGGAATTATTGCATCACAAAATGCTACCGTTGCCATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285805|gb|CF075600.1|CF075600
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|33097429|gb|CF057389.1|CF057389
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|33285569|gb|CF075364.1|CF075364
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACACTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|211076372|gb|FL154532.1|FL154532
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACTGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|78087486|gb|DV515879.1|DV515879
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
EST: gi|67023704|gb|CO452453.1|CO452453
EST:     ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAG                         ATGGCACTGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA
genomic: ATTACCTTAGTCAACTCATGGGAAACAATTACACTGGTGACCGAAATGAGgtaacatggg ... tctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctaacaaagagcactctttttacgagttaacttttttctatttctttcccagATGGCACAGTTGCCAGAAGGTATTACAGAATTACTGCATCACAAAACGCTACCATTGCCATTG
                             ttaacttttttctatt  CT-rich tract
                             ttaacttttttctatt  TA-rich tract