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...tgccccccaggctctgaaatgctgtttctaatgagtatagactatagaagttacttccctatttttccttttcagctctacctatgattttttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAGCTCAACTACCAGAATGAAGATATCCACGTTTATTTTGTCCGTGGAAAAG
species | Zea mays |
transcript | GRMZM2G376074_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAAATGAAGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAG GTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAGEST: gi|211478838|gb|FL266345.1|FL266345
genomic: CAAATGACGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAGgtaagctact ... tttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG
EST: CAAATGACGATTTTGGGGCCAGAGAGCCCTATGKCAGAACTGATCCTGAG GTTTGTGAAGAATGTGTTGGAGAAAGGGAGAGCTGTGCATTGGTGCAGAAGEST: gi|67022296|gb|CO451045.1|CO451045
genomic: CAAATGACGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAGgtaagctact ... tttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG
EST: CAAATGAAGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAG GTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG
genomic: CAAATGACGATTTTGGGGCCAGAGAGCCCTATGTCAGAACTGATCCTGAGgtaagctact ... tttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAG
agaagttacttccctatttttccttttcagctctacctatgattttttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAGCTCAACTACCAGAATGAAGATATCCACGTTTATTTTGTCCGTGGAAAAG
ttttttat CT-rich tract
tatgattttttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccccccaggctctgaaatgctgtttctaatgagtatagactatagaagttacttccctatttttccttttcagctctacctatgattttttatgatagGTTTGTGAAGAATGTGTTGGAGAAAGAGAGAGCTGTGCATTGGTGCAGAAGCTCAACTACCAGAATGAAGATATCCACGTTTATTTTGTCCGTGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA