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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaaaccagtttctttaacactttttgcccttttcatttgcagctgtgttaatgttcgattaaataattcttttttccttgtgatgtactaaaggtgcccaaaaacttgctcgcggatgttcgattaaataattcttttttccttgtgatgtactgaaggtgcccaaaaacttgctcgcatccggctaagATTTCTTCAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCC

Basic information

species Zea mays
transcript GRMZM2G370377_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 9
gtactaaaccagtttctttaacactttttgcccttttcatttgcagctgtgttaatgttcgattaaataattcttttttcc-ttgtgatgtactaaaggtgcccaaaaacttgctcgcggatgttcgattaaataattcttt--tttccttgtgatgtactgaaggtgcccaaaaacttgctcgcatccg-----gctaagATTTCTTCAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCC
                                                                 | ||    ||| |||   |  ||     | || | ||   |     | |  |    | ||   || |||  || |||  |||  || ||||||  || ||||||||| |||||||| ||||||||      |    ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||                                    
---------------------------------------------------------------gtactagccttttcttctgcttcgaccctttcaatgcgctgcaggctatccatgtaagttttactttcaattcttatttattttggttttgatgtcttgcagGTGCCCAGAAACTTGCACGCATCCGTGAGAACAGCAATTTCTTTAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTCGGAGACAATGACTCTCCAGT------------------------------------

upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 9
gtactaaaccagtttctttaacact--ttttgcccttttcatttgcagctgtgttaatgttcgattaaataattcttttttccttgtgatgtactaaaggtgcccaaaaactt-gctcgcggatgttcgattaaataattcttttttccttgtgatgtactgaaggtgcccaaaaacttgctcgcatccggctaag-
           ||||   |  ||||  || ||| |||| | ||||||  ||| ||         ||  || ||| ||| |        ||  |  ||   |   |    |||| | |  |    || |  | || ||| | |||| |       || ||     |||||||| |||||||| |  || ||    |      | || || |||||||| ||  |||||||||| |||||||||||||| || ||||| ||||| ||                                    
-----------gtttggctggcactagttctgctctttgc-tttgcatttgtattg--------tttgatgattttttatgtgcatcaatcca--aataatattcgtctactttgtttac---cgtgcattgaagtaagttttttct-------atata-----gGTGCCCAGAAACTTGCACAAATTCGAGAGAATAGCAACTTTTTTAGGTCAGAACTGCAGAAGATGGGATTTGAGGTTCTTGGGGATAATGATTCTCCAGT------------------------------------

upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 11
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 9
gtactaaaccagtttctttaacactttttgcccttttcatttgcagc-tgtgttaatgttcgattaaa-taattcttttttccttgtgatgtactaaaggtgcccaaaaacttgctcgcggatgttcgattaaataattcttttttccttgtgatgtactgaaggtgcccaaaaacttgctcgcatccggctaag-
                                          | ||  |   | ||| |||  | |   |   | ||   | ||  |  || |      |    || |  ||   | ||     ||   ||   | ||| |  |   |||||| |  | || ||| |||||||||||||| |  || ||    |      | || ||||||||||| ||  |||  |||||||||||||||||||| || ||||||||||| ||                                    
------------------------------------------gtaggataaataaatcttctgtcatgcttggttttaacttctattcttgaatctttaggtttcagactctccattgctttaattgtttt---tgattttagtgctcttgtg-tcca-tgtagGAGCCCAAAAACTTGCACAAATACGTGAGAATAGCAACTTTTTCAGGTCAGAACTGCAGAGCATGGGTTTTGAGGTTCTTGGGGATAATGACTCTCCAGT------------------------------------

upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 11
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 10
gtactaaaccagtttctttaacactttttgcccttttcatttgcagctgtgttaatgttcgattaaataattcttttttccttgtgatgtactaaaggtgcccaaaaacttg-ctcgcggatgttcgattaaataattcttttttccttgtgatgtactgaaggtgcccaaaaacttgctcgcatccg-----gctaagATTTCTTCAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCC
                                                  ||| |   ||  ||  ||| |||    ||  | |||    | |  || |   ||||       || | |  | || | ||  ||  ||   | | | ||    |  |    ||| || || ||| | || || || ||      |    | || ||||| ||||| ||  |||||||||| |||||||||||||| || ||||| ||||||||                                    
--------------------------------------------------gttcaccctc--ttctatatttcaccatttatggtggctca-tgcagctctgcaaacctagatcttgagcttatttgctt--attgtttgatctgcttttgtttaaatattagGGGCTCAGAAATTGGCACGAATACGTGAGAACAGTAACTTTTTCAGATCAGAACTGCAGAAGATGGGCTTTGAGGTTCTTGGAGATAATGATTCTCCTGT------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttccttgtgatgtactgaaggtgcccaaaaacttgctcgcatccggctaagATTTCTTCAGGTCAGAGCTCAAGAAGATGGGTTTTGAGGTTCTTGGTGACAATGACTCTCCTGTCATGCCCATAATGCTCTACAATCCGGCTAAGATTCC
                              aaaaactt  TA-rich tract