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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttgccaaagaagctttctctcacatcaatttgagtatcacactgattctgacaattggttctaaaaccatgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGACTCCGCCACCACAACCTGAAACCCAAGCATCTGAGCCTCAAACACCAGAG

Basic information

species Zea mays
transcript GRMZM2G361605_T02
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32823200|gb|CD962922.1|CD962922
EST:     GATCTGAAGAAGAAAGCTGAAACACTTGACCG                         GTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
genomic: GATCTGAAGAAGAAAGCTGAAACACTTGACCGgttcgttgcc ... tgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
EST: gi|83279123|gb|DV943131.1|DV943131
EST:     AAACACTTGACCG                         GTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
genomic: AAACACTTGACCGgttcgttgcc ... tgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
EST: gi|60337311|gb|DN204284.1|DN204284
EST:     CCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCG                         GTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
genomic: CCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCGgttcgttgcc ... tgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
EST: gi|67025328|gb|CO454077.1|CO454077
EST:     CCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCG                         GTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC
genomic: CCTGTGCTGCTCGTATCGGATCTGAAGAAGAAAGCTGAAACACTTGACCGgttcgttgcc ... tgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatttgagtatcacactgattctgacaattggttctaaaaccatgttttacagGTTCTGCAAACCGATCATGACAAAACCAAAGCCGGCTCCAAAGCCACAGACTCCGCCACCACAACCTGAAACCCAAGCATCTGAGCCTCAAACACCAGAG
                                  ttctaaa  putative branch site (score: 2)
                                  ttctaaaa  TA-rich tract