Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatttcatacttacctgggcatttgtattctgcccctggtcgtcatatctccctaatcacttccttaacagAAACCAGAATACATGCACTGACTCTCAAATGGGCCACTCAAGGACCAATGATGTTCTGCGTAAAAGGATAACTGGCACCATTCTCAATGTTGACAACTTA

Basic information

species Zea mays
transcript GRMZM2G350818_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015716|gb|CO444465.1|CO444465
EST:     GCTGCTGAACTCCAG-ATGGCTGTACAAGTAAA-CCGATCAGCATTCAGT                         AAACCAGAATACATGCACTGACTCTCAA-TGGGCCACTCAAG-ACCA-TGA
genomic: GCTGCTGAACTCCAGGATGGCTGTACAAGTAAAACCGATCAGCATTCAGTgtgagtcatt ... tccttaacagAAACCAGAATACATGCACTGACTCTCAAATGGGCCACTCAAGGACCAATGA
EST: gi|31348714|gb|CD433071.1|CD433071
EST:     GCTGCTGAACTCCAGGATGGCTGTACAAGTAAAACCGATCAGCATTCAGT                         AAACCAGAATACATGCACTGACTCTCAAATGGGCCACTCAAGGACCAATGA
genomic: GCTGCTGAACTCCAGGATGGCTGTACAAGTAAAACCGATCAGCATTCAGTgtgagtcatt ... tccttaacagAAACCAGAATACATGCACTGACTCTCAAATGGGCCACTCAAGGACCAATGA
EST: gi|211366115|gb|FL398815.1|FL398815
EST:     GCTGCTGAACTCCAGGATGGCTGTACAAGTAAAACCGATCAGCATTCAGT                         AAACCAGAATACATGCACTGACTCTCAAATGGGCCACTCAAGGACCAATGA
genomic: GCTGCTGAACTCCAGGATGGCTGTACAAGTAAAACCGATCAGCATTCAGTgtgagtcatt ... tccttaacagAAACCAGAATACATGCACTGACTCTCAAATGGGCCACTCAAGGACCAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggcatttgtattctgcccctggtcgtcatatctccctaatcacttccttaacagAAACCAGAATACATGCACTGACTCTCAAATGGGCCACTCAAGGACCAATGATGTTCTGCGTAAAAGGATAACTGGCACCATTCTCAATGTTGACAACTTA
                                  ccctaat  putative branch site (score: 3)
                                        tcacttcctt  CT-rich tract
     tttgtatt  TA-rich tract