1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagatataggcagcctgtaatgcttctttgttcattgccttctgatggctcgctcgctcactctgggttggcgtctgattctgttcctgcatttgcccgtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGGACAGCCAAGGAGATGTCCAGAGCCACGCGCACCATATTGAGATGTGAG
species | Zea mays |
transcript | GRMZM2G347541_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|32935750|gb|CF040562.1|CF040562
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|148945203|gb|EC890407.2|EC890407
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|67021468|gb|CO450217.1|CO450217
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCANGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|211200736|gb|FL456076.1|FL456076
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|149058823|gb|EE156844.2|EE156844
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|211404184|gb|FL441812.1|FL441812
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|211224453|gb|FL435606.1|FL435606
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|71423918|gb|DR806180.1|DR806180
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|76292778|gb|DV032346.1|DV032346
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|76288308|gb|DV027876.1|DV027876
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGEST: gi|50336834|gb|CO531960.1|CO531960
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
EST: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGG AGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
genomic: TCGTCGCAGCAGGAATTGCAGGGTACGCGGTGTACAAGTACAGGATCCGGgtaagatata ... gtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatataggcagcctgtaatgcttctttgttcattgccttctgatggctcgctcgctcactctgggttggcgtctgattctgttcctgcatttgcccgtgtctgcagAGGTACATGGACTCGGAGATCCGCGCCATCATGGCCCAGTACATGCCTCTGGACAGCCAAGGAGATGTCCAGAGCCACGCGCACCATATTGAGATGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG