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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccatgtcattctaatttgtgtaacatattatgcacctgagctgttactgtctttttatcttacataaggaatgctcttcaattccagGGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAACCTGTATATTCACAACATGCATATTCCCACCCCCAACCTGTGAAAGCTT

Basic information

species Zea mays
transcript GRMZM2G341732_T02
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077120|gb|DV505554.1|DV505554
EST:     GAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         GGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAA
genomic: GAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... tcaattccagGGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAA
EST: gi|91056962|gb|EB167380.1|EB167380
EST:     GAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTG                         GGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAA
genomic: GAGCTCCCCATTTTGGAATGGGATACGCCATGCAATATCCACCTGGAGTGgtatccatgt ... tcaattccagGGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacctgagctgttactgtctttttatcttacataaggaatgctcttcaattccagGGATTGCAATCATATCTTCACGGAGCATTTCCTCAGCCTACATATCAGCAACCTGTATATTCACAACATGCATATTCCCACCCCCAACCTGTGAAAGCTT
                        atcttac  putative branch site (score: 3)
                                       tgctcttc  putative PPT
                   tttttatcttacataa  TA-rich tract