1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atctgtcgcgtacttctatatgctgcaatcctcttctgcagactttgcaaagagctaggaaaatgactagtacatatgatgaaatatgttgaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAGATCAAGTCCCTCAAGGCATTGGTATGTTGTCCTAATAACTTCTGTCTCC
species | Zea mays |
transcript | GRMZM2G341271_T05 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAG ATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAGEST: gi|32864490|gb|CF004172.1|CF004172
genomic: TTGCATTGCGTGAGCAAGCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtcttt ... gaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
EST: GCTGAATCATTAAGATCATTGTTAGCTAAAAAG ATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
genomic: GCTGAATCATTAAGATCATTGGTAGCTAAAAAGgtttgtcttt ... gaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAG
tgcaaagagctaggaaaatgactagtacatatgatgaaatatgttgaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAGATCAAGTCCCTCAAGGCATTGGTATGTTGTCCTAATAACTTCTGTCTCC
ttttc CT-rich tract
aaatatgttgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgtcgcgtacttctatatgctgcaatcctcttctgcagactttgcaaagagctaggaaaatgactagtacatatgatgaaatatgttgaattttcagATTGAGGAACACAAGAAGATTTCGGATAAATACAACTCACAAGTAATTGAGATCAAGTCCCTCAAGGCATTGGTATGTTGTCCTAATAACTTCTGTCTCC
- ctgtcgc
- - - - - - - - - -atgctgc
- - - - - - - - - - - - - - - - cttctgc
- - - - - - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgaa