1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgactttttgaagaacatggtgcctgctacaaagtttctactttgtagcccattgttcttattttcttacccgccttcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGTTCAGCCATCAATTGTATCTCATCCCTCCTTCTGGGAAAGAATTGGTAGCGACACATTAGCTA
species | Zea mays |
transcript | GRMZM2G340749_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACAAGCTTCCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCG CGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGTTCAGCCATCAATTEST: gi|67024274|gb|CO453023.1|CO453023
genomic: ACAAGCTTCCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCGgtatgacttt ... tcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGTTCAGCCATCAATT
EST: ACAAGCTTCCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCG CGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGTTCAGCCATCAATTEST: gi|31359147|gb|CD443504.1|CD443504
genomic: ACAAGCTTCCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCGgtatgacttt ... tcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGTTCAGCCATCAATT
EST: ACAAGCTTCCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCG CGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGGTCAGCCATCAATTEST: gi|166497331|gb|EG148181.1|EG148181
genomic: ACAAGCTTCCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCGgtatgacttt ... tcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGTTCAGCCATCAATT
EST: CCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCG CGGCACCCTGCAGTTACCCCCTGCTAGCTATCCCCAAGTTCAGCCATCAAT
genomic: CCACAACCAAAGGACTCTGAGCGTGCTAAAACTTACATCCCGgtatgacttt ... tcattttcagCGGCACCCTGCAGTTACCCC-TGCTAGCTATCCCCAAGTTCAGCCATCAAT
aagtttctactttgtagcccattgttcttattttcttacccgccttcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGTTCAGCCATCAATTGTATCTCATCCCTCCTTCTGGGAAAGAATTGGTAGCGACACATTAGCTA
ttcttac putative branch site (score: 2)
ttcttattttcttacc CT-rich tract
attgttcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgactttttgaagaacatggtgcctgctacaaagtttctactttgtagcccattgttcttattttcttacccgccttcattttcagCGGCACCCTGCAGTTACCCCTGCTAGCTATCCCCAAGTTCAGCCATCAATTGTATCTCATCCCTCCTTCTGGGAAAGAATTGGTAGCGACACATTAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA