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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcattttctgtgctcatgtagctgtgtttagtgcctactgtcttaactattagtagtcatgttattaaaaagcttaattttctttttgtattctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCAAGGATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGA

Basic information

species Zea mays
transcript GRMZM2G324540_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324540_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 3'ss of exon 9
-----ttcattttctgtgctcatgtagctgtgtttagtgcctactgtcttaactattagtagtcatgttattaaaaagcttaattttctttttgtattctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCAAGGATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGA
        ||||| | |  | || |  |  |   || |    | ||| | || |      | |  | || ||  ||| |||| || | ||     | ||| | ||||||||||||||||||| |||| |||||||||||| ||||||| |||||||||||||||  ||||||||||||| |||||| || ||||||||||||| |
tttaccatattttatattgtaatatttcaattggtaatataaaatgtttcaattca----aattctattgtttcaaa-cttatttgttttacaaaaatctgtcagGTTGAAGCTGTTACAGTCCATGCGACTCAGAAGTACTTTGTGACTGCTTCCAAGGATAATACTTGGTGCTTCTACGATATTCCATCAGGATCTTGCCTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33096397|gb|CF056391.1|CF056391
EST:     AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAG                         GTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
genomic: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAGgttagtattt ... attctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
EST: gi|60400048|gb|DN232855.1|DN232855
EST:     AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAG                         GTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
genomic: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAGgttagtattt ... attctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
EST: gi|60337485|gb|DN204458.1|DN204458
EST:     AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAG                         GTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC
genomic: AGAATGGAAACTATAACTGTGTCCATACACTGAAAGATCATACTGATGAGgttagtattt ... attctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactattagtagtcatgttattaaaaagcttaattttctttttgtattctcttagGTTGAAGCTGTTACAGTACATGTGACTCAGAAGTATTTTGTGAGTGCTTCCAAGGATAACTCTTGGTGCTTCTATGATATTTCAACAGGATCTTGCCTGA
                                 ttttctttttgtattc  CT-rich tract
              atgttattaaaaagct  TA-rich tract