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...tttatcatggattattctctgttaacctaaggttaatagatgtcaaagtgaaaattatttctaagactttcttgttgacaaaccatatttccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGCTGGAGTGGAATCAAATACAAACCACCCGCTTGGAAAAGCCATCATGGAA
species | Zea mays |
transcript | GRMZM2G315931_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAA GGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGCEST: gi|211170367|gb|FL103276.1|FL103276
genomic: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAAgttgagtctc ... ccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
EST: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAA GGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGCEST: gi|13125965|gb|BG316640.1|BG316640
genomic: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAAgttgagtctc ... ccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
EST: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAA GGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
genomic: GTGATAACTAAAGTAATACCTTCTAGAGGCATGGGCGATGCGAATACAAAgttgagtctc ... ccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGC
aagtgaaaattatttctaagactttcttgttgacaaaccatatttccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGCTGGAGTGGAATCAAATACAAACCACCCGCTTGGAAAAGCCATCATGGAA
tgttgac putative branch site (score: 3)
tttccgtc putative PPT
aaaattatttctaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatcatggattattctctgttaacctaaggttaatagatgtcaaagtgaaaattatttctaagactttcttgttgacaaaccatatttccgtcatcagGGATTTGGGGGCCAACCAGTGGGCAGAGGCTGACATTCTGAGTTTTGCTGCTGGAGTGGAATCAAATACAAACCACCCGCTTGGAAAAGCCATCATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - -catggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacca