Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggagtttatttttaaaaattattggaagtttgtattcttgtagttcttgcagttaccaatttaggactgtggggataaaggaaattcattctggttacagGATTGAGAGTGCTGTTGCTGAAAAGTCACATGAAGATCACGCAGAGCATGATCATGAACACCATGAGCATGAGAATGAACACGACCATGACCATCATCAC

Basic information

species Zea mays
transcript GRMZM2G180418_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94477086|gb|EB706044.1|EB706044
EST:     AAAGTTGATTTGGACTATGTTCTTGGAATTGGAGGATTTGATCTGGAGAG                         GATTGAGAGTGCTGTTGCTGAAAAGT
genomic: AAAGTTGATTTGGACTATGTTCTTGGAATTGGAGGATTTGATCTGGAGAGgttcctttct ... ctggttacagGATTGAGAGTGCTGTTGCTGAAAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcagttaccaatttaggactgtggggataaaggaaattcattctggttacagGATTGAGAGTGCTGTTGCTGAAAAGTCACATGAAGATCACGCAGAGCATGATCATGAACACCATGAGCATGAGAATGAACACGACCATGACCATCATCAC
                                       ttcattct  CT-rich tract
                                    aaattcatt  TA-rich tract