1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgtccatcacagtaaaattcagcacagataggccttcaagcaactcttcaacatctgcacaggttctttatgctctaaactgttcttttgtaacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTCCTGGCCGACATGGATTCTGTTGGGAAGGAAGCACAG
species | Zea mays |
transcript | GRMZM2G176546_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAG TGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTCEST: gi|67023162|gb|CO451911.1|CO451911
genomic: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAGgtaaaagatt ... taacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTC
EST: CAGTTGAACCAAAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAG TGCGAAGACTTGAGACAGCTNTGTGCTGACCCTANAGCAAGAGCTGCAGTCEST: gi|93281969|gb|EB674233.1|EB674233
genomic: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAGgtaaaagatt ... taacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTC
EST: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAG TGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTCEST: gi|6194494|gb|AW146598.1|AW146598
genomic: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAGgtaaaagatt ... taacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTC
EST: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAG TGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTCEST: gi|5915188|gb|AW052829.1|AW052829
genomic: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAGgtaaaagatt ... taacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTC
EST: AAGGCTTGGGCTGCATCTGAAGGGATCCAG TGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTCEST: gi|50335868|gb|CO530994.1|CO530994
genomic: AAGGCTTGGGCTGCATCTGAAGGGATCCAGgtaaaagatt ... taacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTC
EST: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAG TGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTC
genomic: CAGTTGAACCAGAGGTTATGAAGGCTTGGGCTGCATCTGAAGGGATCCAGgtaaaagatt ... taacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTC
cttcaacatctgcacaggttctttatgctctaaactgttcttttgtaacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTCCTGGCCGACATGGATTCTGTTGGGAAGGAAGCACAG
ttgtaac putative branch site (score: 81)
ttcttttgt CT-rich tract
ttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtccatcacagtaaaattcagcacagataggccttcaagcaactcttcaacatctgcacaggttctttatgctctaaactgttcttttgtaacatgtagTGCGAAGACTTGAGGCAGCTTTGTGCTGACCCTAGAGCAAGAGCTGCAGTCCTGGCCGACATGGATTCTGTTGGGAAGGAAGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -ccatcac
- - - - - - - - -ttcagca
- - - - - - - - - - - - - - - -gccttca
- - - - - - - - - - - - - - - - - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctc