1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gactacatatacgttgcaactgtgatgttattgtgctgagtggattattgcactattctttgatgtgcaattcctgattgtttttgtttgtttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGGCCCAAAATTGTGGTTTGAATGTTATTAGGATAATGACACAACTTCAGG
species | Zea mays |
transcript | GRMZM2G175510_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|33093301|gb|CF053295.1|CF053295
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|5895898|gb|AW037144.1|AW037144
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|22489574|gb|BU049497.1|BU049497
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|60349009|gb|DN215982.1|DN215982
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|60354814|gb|DN221787.1|DN221787
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|71428864|gb|DR809914.1|DR809914
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: AAAGAGTTTTTCAGTTGAAGGCGGGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|17970136|gb|BM276901.1|BM276901
genomic: AAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGATCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|18385090|gb|BM418289.1|BM418289
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|71332447|gb|DR803182.1|DR803182
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|71762722|gb|DR960659.1|DR960659
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|78021982|gb|DV490369.1|DV490369
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGEST: gi|211513338|gb|FL030354.1|FL030354
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
EST: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAG TGGCCCTATGAAGCTGCTGCTTTAGCATTTGAGGCAATTCCAAGGACTTTG
genomic: TATCAGCAACACTGAAGCAAAAGAGTTCTTCAGTTGAAGGCGTGGAAAAGgtattgtttg ... tttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTG
tattgcactattctttgatgtgcaattcctgattgtttttgtttgtttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGGCCCAAAATTGTGGTTTGAATGTTATTAGGATAATGACACAACTTCAGG
tcctgat putative branch site (score: 65)
tttgttt putative PPT
attgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactacatatacgttgcaactgtgatgttattgtgctgagtggattattgcactattctttgatgtgcaattcctgattgtttttgtttgtttgtgtcagTGGCCCTATGAAGCTGCTGCTCTAGCATTTGAGGCAATTCCAAGGACTTTGGCCCAAAATTGTGGTTTGAATGTTATTAGGATAATGACACAACTTCAGG
- - - - - - - -gcaactg
- - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - gtgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg