Sequence
atgc intronic sequence ATGC exonic sequencegtaagtctcaagctctctctcaatttggaagatgagttggtgatttatttcttaatgaagaatacatgtattgctaatgatgaccatctagcttcttttgcaatttctaacaagaaatcaaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G174830_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os12g35350.1 (Oryza sativa), 3'ss of exon 11
gtaagtctcaagctctctctcaatttggaagatgagttggtgat-----ttatttcttaatg-----aagaatacatgtattgctaatgatgacc-atctagcttcttttgcaatttctaacaagaaat--caaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAA
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gtatgtttcaagctctcaacttat--ggaaatagaattggaaatgaggtctatttcagtttgtctctgagaaatcacactttcacaagaatggtttatcttgattata--gcagtttgtaacaaaaaatatcgaattctcagGGCATGCAGAAACCTGGGCTTTTGATGTTGTAGAATATAAGTGGTCGGTATGTGTAGTACCCCCTAGTTCCTCGATTGCTACAAAGAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211020705|gb|FL318029.1|FL318029EST: TCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCGCAAGCAAGAAAAAAC GACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTT
genomic: TCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCGCAAGCAAGAAAAAACgtaagtctca ... aaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatgatgaccatctagcttcttttgcaatttctaacaagaaatcaaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAA
ttctaac putative branch site (score: 1)
ttctc putative PPT
aaatcaaatt TA-rich tract