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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctcaagctctctctcaatttggaagatgagttggtgatttatttcttaatgaagaatacatgtattgctaatgatgaccatctagcttcttttgcaatttctaacaagaaatcaaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAA

Basic information

species Zea mays
transcript GRMZM2G174830_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174830_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os12g35350.1 (Oryza sativa), 3'ss of exon 11
gtaagtctcaagctctctctcaatttggaagatgagttggtgat-----ttatttcttaatg-----aagaatacatgtattgctaatgatgacc-atctagcttcttttgcaatttctaacaagaaat--caaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAA
||| || ||||||||||     ||  ||||   || ||||  ||      ||||||    ||      ||||  ||    ||   ||  |||    |||| | || |   ||| ||| |||||| ||||  | |||||||||| ||||| ||||| |||| |||||||||| || ||| ||| ||||| || |||||||| ||||||||||| |||||| ||||||| |||
gtatgtttcaagctctcaacttat--ggaaatagaattggaaatgaggtctatttcagtttgtctctgagaaatcacactttcacaagaatggtttatcttgattata--gcagtttgtaacaaaaaatatcgaattctcagGGCATGCAGAAACCTGGGCTTTTGATGTTGTAGAATATAAGTGGTCGGTATGTGTAGTACCCCCTAGTTCCTCGATTGCTACAAAGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340595|gb|DN207568.1|DN207568
EST:     TCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCGCAAGCAAGAAAAAAC                         GACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTT
genomic: TCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCGCAAGCAAGAAAAAACgtaagtctca ... aaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTT
EST: gi|91873012|gb|EB402969.1|EB402969
EST:     TCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCGCAAGCAAGAAAAAAC                         GACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTT
genomic: TCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCGCAAGCAAGAAAAAACgtaagtctca ... aaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTT
EST: gi|211020705|gb|FL318029.1|FL318029
EST:     TCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCGCAAGCAAGAAAAAAC                         GACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTT
genomic: TCTCTGTGGAACTAAGTGGTACATAGCTGGCGGCGCAAGCAAGAAAAAACgtaagtctca ... aaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgatgaccatctagcttcttttgcaatttctaacaagaaatcaaattctcagGACATGCTGAAACTTGGGTTTTTGATGTTCTACAATGTAAATGGTCTGTTTGTGTAGTGCCCCCTAGTTCATCGATTACTACAAAAAAA
                              ttctaac  putative branch site (score: 1)
                                                ttctc  putative PPT
                                        aaatcaaatt  TA-rich tract