1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtagtgttgtctggtggattgagttgattttttcttgatgtatgtagttcctgacaatttccacattttgtcgtgacagGTGGAAGATGCTACGAAAGCTCTGGAAGCTACAAACGGGATTACACTTGAGAAAAACGGTCAGGTTTTGCGTGTAGCATATGCTAAAAGTACACATGGAC
species | Zea mays |
transcript | GRMZM2G173777_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATAAGTTTACTCATGTGTCTAGAGGTTTTGCCTTCGTTCATTTCCATTCG GTGGAAGATGCTACGAAAGCTCTGGAAGCTACAAACGGGATTACACTTGAGEST: gi|211344311|gb|FL081282.1|FL081282
genomic: ATAAGTTTACTCATGTGTCTAGAGGTTTTGCCTTCGTTCATTTCCATTCGgtaagtagtg ... gtcgtgacagGTGGAAGATGCTACGAAAGCTCTGGAAGCTACAAACGGGATTACACTTGAG
EST: ATAAGTTTACTCATGTGTCTAGAGGTTTTGCCTTCGTTCATTTCCATTCG GTGGAAGATGCTACGAAAGCTCTGGAAGCTACAAACGGGATTACACTTGAGEST: gi|13490949|gb|BG517713.1|BG517713
genomic: ATAAGTTTACTCATGTGTCTAGAGGTTTTGCCTTCGTTCATTTCCATTCGgtaagtagtg ... gtcgtgacagGTGGAAGATGCTACGAAAGCTCTGGAAGCTACAAACGGGATTACACTTGAG
EST: ATAAGTTTACTCATGTGTCTAGAGGTTTTGCCTTCGTTCATTTCCATTCG GTGGAAGATGCTACGAAAGCTCTGGAAG-NNNNNNNGGGATTACACTTGAG
genomic: ATAAGTTTACTCATGTGTCTAGAGGTTTTGCCTTCGTTCATTTCCATTCGgtaagtagtg ... gtcgtgacagGTGGAAGATGCTACGAAAGCTCTGGAAGCTACAAACGGGATTACACTTGAG
tgattttttcttgatgtatgtagttcctgacaatttccacattttgtcgtgacagGTGGAAGATGCTACGAAAGCTCTGGAAGCTACAAACGGGATTACACTTGAGAAAAACGGTCAGGTTTTGCGTGTAGCATATGCTAAAAGTACACATGGAC
tcctgac putative branch site (score: 168)
ttttgtc putative PPT
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagtgttgtctggtggattgagttgattttttcttgatgtatgtagttcctgacaatttccacattttgtcgtgacagGTGGAAGATGCTACGAAAGCTCTGGAAGCTACAAACGGGATTACACTTGAGAAAAACGGTCAGGTTTTGCGTGTAGCATATGCTAAAAGTACACATGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA