Sequence
atgc intronic sequence ATGC exonic sequence...atgctctcatgttagtattcttacagttgaattttgttgaatgatggccatgttttttttctatgttttctgaatcttttcatttgaatattttatgtagGTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G096553_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g43374.1 (Oryza sativa), 3'ss of exon 7
---atgctctcatgttagtattct-tacagttgaattttgttgaatgatggccatgttttttttctatgttttctgaatcttttcatttgaatattttatgtagGTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG
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tctgttaccctttttctctgttctgttttgttga--ccaatttattaattctcatattttgcttatgcgtctttcttatttgctg--ttgcctcttttatgaagGTACGTTCATAGTTACCAAAGTTACCTCTGGAACCATGCTGCCAGTGCCAGAGTTGAAAAATATG
upper sequence: GRMZM2G096553_T02 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA03G40600.1 (Glycine max), 3'ss of exon 12
atgctctcatgttagtattcttacagttgaattttgttgaatgatggccatgtttttttt---ctatgttt-tctgaatcttttcatttgaata-ttttatgtagGTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG
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----tctgctcagaacacaaataaagttgtaatatatt-attcaagatcatttatttgaaggattatattggtattcattatatagttccactgcttttttttagGTATGTTCATAGTTACCAAAGCTATTTGTGGAACCATGCTGCAAGTAAGAGGGTGCAAAAATATG
upper sequence: GRMZM2G096553_T02 (Zea mays), 3'ss of exon 11
lower sequence: Vv14s0030g01850.t01 (Vitis vinifera), 3'ss of exon 7
-atgctctcatgttagtattcttacagttgaattttgttgaatgatggccatgttttttttctatgttttctgaatcttttcatt-tgaatattttatgtagGTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG
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agaaatgagaggtgaatacttcttt--tcgactcctgtggacatgaaactttgtgattttagacttccaatttgaccattttattctggttctacttttcagGTATGTACATAGTTACCAAAGCTATCTGTGGAACCATGCAGCTAGTATGAGAGTGCAAAACTATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211231092|gb|FL345106.1|FL345106EST: GGTAACCATCTACAAGCACTCAAGGGTATACCAAGAACACTGAGAATGAT GTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAG
genomic: GGTAACCATCTACAAGCACTCAAGGGTATACCAAGAACACTGAGAATGATgtatgttgca ... ttttatgtagGTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggccatgttttttttctatgttttctgaatcttttcatttgaatattttatgtagGTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG
aatcttttcatttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgctctcatgttagtattcttacagttgaattttgttgaatgatggccatgttttttttctatgttttctgaatcttttcatttgaatattttatgtagGTACGTACATAGTTACCAAAGTTATCTGTGGAATCATGCTGCCAGTATGAGAGTGGAAAAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA