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...cattggtttgagaggaagtgaggcatgatgtattttgataagtcaacttcgtcaggactttgtagaggggaggagctcatacaatgcatgtatattgcagAAATGAGGAGGCGAAAGGGCAGTTATGGTCTGAAGCTGAACGTCGCTGAAATGGATGCATCCAGCCTTGATGCTTTCGCCACCGCCGCAGTATTTGGCGA
species | Zea mays |
transcript | GRMZM2G172621_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAGTTGACCCCAAGAGAGTTGCAAAGTGTTCTGCAGCAGTATGAAG AAATGAGGAGGCGAAAGGGCAGTTATGGTCTGAAGCTGAACGTCGCTGAAAEST: gi|76936794|gb|DV174899.1|DV174899
genomic: TGAAGAGTTGACCCCAAGAGAGTTGCAAAGTGTTCTGCAGCAGTATGAAGgtacgattta ... tatattgcagAAATGAGGAGGCGAAAGGGCAGTTATGGTCTGAAGCTGAACGTCGCTGAAA
EST: TGAAGAGTTGACCCCAAGAGAGTTGCAAAGTGTTCTGCAGCAGTATGAAG AAATGAGGAGGCGAAAGGGCAGTTATGGTCTGAAGCTGAACGTCGCTGAAA
genomic: TGAAGAGTTGACCCCAAGAGAGTTGCAAAGTGTTCTGCAGCAGTATGAAGgtacgattta ... tatattgcagAAATGAGGAGGCGAAAGGGCAGTTATGGTCTGAAGCTGAACGTCGCTGAAA
acttcgtcaggactttgtagaggggaggagctcatacaatgcatgtatattgcagAAATGAGGAGGCGAAAGGGCAGTTATGGTCTGAAGCTGAACGTCGCTGAAATGGATGCATCCAGCCTTGATGCTTTCGCCACCGCCGCAGTATTTGGCGA
atgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattggtttgagaggaagtgaggcatgatgtattttgataagtcaacttcgtcaggactttgtagaggggaggagctcatacaatgcatgtatattgcagAAATGAGGAGGCGAAAGGGCAGTTATGGTCTGAAGCTGAACGTCGCTGAAATGGATGCATCCAGCCTTGATGCTTTCGCCACCGCCGCAGTATTTGGCGA
- - - - - - - - - - aggcatg
- - - - - - - - - - - - - - tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcatg