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...cttggatcagccataatttgctttactgttactgttgctgttctccactaaaccgccacagttacattgattaatatgcttattgttttgctgcttgcagGTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGGAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGCAGATG
species | Zea mays |
transcript | GRMZM2G171660_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGGEST: gi|148994719|gb|EE034216.2|EE034216
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAGgtacacctaa ... ctgcttgcagGTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGG
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGGEST: gi|31350522|gb|CD434879.1|CD434879
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAGgtacacctaa ... ctgcttgcagGTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGG
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGGEST: gi|211350120|gb|FL467182.1|FL467182
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAGgtacacctaa ... ctgcttgcagGTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGG
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAG GTTTGTGAAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGEST: gi|76909702|gb|DV163492.1|DV163492
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAGgtacacctaa ... ctgcttgcagGTTTGTG-AAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAG
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGGEST: gi|86471788|gb|DY238158.1|DY238158
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAGgtacacctaa ... ctgcttgcagGTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGG
EST: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAG GTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGG
genomic: CTGATGTTAGAGAGGAATGCATCAAGTTTGGTCCGGTGGATAATGTCAAGgtacacctaa ... ctgcttgcagGTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGG
cactaaaccgccacagttacattgattaatatgcttattgttttgctgcttgcagGTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGGAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGCAGATG
ttttgct CT-rich tract
ttacattgattaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttggatcagccataatttgctttactgttactgttgctgttctccactaaaccgccacagttacattgattaatatgcttattgttttgctgcttgcagGTTTGTGAAAATCATCCACAAGGTGTCATATTGGTGAGATTCAAAGACAGGAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG