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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcatacttccttcatcttttgtgtgcaagatgcatcattgcacactcatcgattgtctgctgttgttaaaaagttgatccaatgcacttttctttttttaaaatagaaaatatatctcacttctgtggcatcctatcccccctcagGATTGTGCTGTTGGTCTGCTGTTTGCGCTTCTTCCAATTTTGAGTGGTACATCTGGCCTTCTTCACGGAGTTGCATCAATGACGAAGTC

Basic information

species Zea mays
transcript GRMZM2G171031_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171031_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os06g36590.1 (Oryza sativa), 3'ss of exon 11
--------------------gtctgtcatacttccttcatcttttgtgtgcaagatgcatcattgcacactcatcgattgtctgctgttgttaaaaagttgatccaatgcact--------tttctttttttaaaatagaaaatatatctcacttctgtggcatcctatccccc---ctcagGATTGTGCTGTTGGTCTGCTGTTTGCGCTTCTTCCAATTTTGAGTGGTACATCTGGCCTTCTTCACGGAGTTGCATCAATGACGAAGTC
                     |||   | | ||  |   |  |||| |    ||||| ||   |  |    ||    |||  ||||  |  | || | | || | | || |||        ||||||| | | |  |  |  |  |  ||    |  |||   |   || ||     ||||||| |||||||||||||| || ||||| |||||||||||| |||||||  | ||||| |||||||| ||||||||||||||| | |||||
gtatgaaagaaatggataccatcttctaaatttgttgagttgtttggg---gagatgaattcgtaaagttgcacgttttgcttgcttcttcttaagaatcgaacgagtggactgattattctttctttatctgagcttcactactttccttgtattggtgatttgacattcctttgtctcagGACTGTGCTGTTGGTCTTCTTTTTGCACTTCTTCCAATTCTGAGTGGCGCTTCTGGTCTTCTTCAAGGAGTTGCATCAATGGCCAAGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttaaaatagaaaatatatctcacttctgtggcatcctatcccccctcagGATTGTGCTGTTGGTCTGCTGTTTGCGCTTCTTCCAATTTTGAGTGGTACATCTGGCCTTCTTCACGGAGTTGCATCAATGACGAAGTC
                      atctcac  putative branch site (score: 3)
                                     catcctatcccccctc  putative PPT
     tttaaaatagaaaata  TA-rich tract