1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...atttattgaagttcatgttagatttatttgtactttagtttttatttactttgttccgtgtgattgatgctaatactgaattgcttaatgttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG
species | Zea mays |
transcript | GRMZM2G169095_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGTACATTTTGGTAAACCCCCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGEST: gi|211089695|gb|FL030414.1|FL030414
genomic: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
EST: TAAACCCTCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGEST: gi|211089690|gb|FL030409.1|FL030409
genomic: TAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
EST: TAAACCCTCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGEST: gi|71439289|gb|DR820339.1|DR820339
genomic: TAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
EST: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGEST: gi|211089692|gb|FL030411.1|FL030411
genomic: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
EST: TAAACCCTCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGEST: gi|67018778|gb|CO447527.1|CO447527
genomic: TAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
EST: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGEST: gi|211089691|gb|FL030410.1|FL030410
genomic: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
EST: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGEST: gi|32937410|gb|CF042229.1|CF042229
genomic: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
EST: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGEST: gi|211092150|gb|FL030416.1|FL030416
genomic: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
EST: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCA GTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
genomic: CTGTACATTTTGGTAAACCCTCAGCACATGAGAAGTCATGCTACACAGCAgtaagtgcta ... ttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACG
ttactttgttccgtgtgattgatgctaatactgaattgcttaatgttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG
ttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttattgaagttcatgttagatttatttgtactttagtttttatttactttgttccgtgtgattgatgctaatactgaattgcttaatgttggaaatagGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG
- - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttaa