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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcactagatatgaatgtgtatcttgtttttgctgctatgtttagcagaaaatatctgcatttagattgcacgttctgtttcctgtccccatgcatcattctgttttgctttgcagCCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAG

Basic information

species Zea mays
transcript GRMZM2G168629_T05
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 3'ss of exon 11
gtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcactagatatgaatgtgtatcttgttt-ttgctgctatgtttagcagaaaatatctgcatttag--attgcacgttctgtttcctgtccccatgc-atcattctgttttgctttgcagCCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAG
                        | ||  ||  ||    |  | | | |||      |  | |||   |   ||  || |||       |||   |||| ||| ||  ||  ||      | ||   || | ||     |  || |||  |    |||  ||||||    || ||  ||||||||| ||||||| | ||||||||||| ||||| || || || |||||||| || ||||| |||||||| ||||||||||||||||||||||||
------------------------gcaagtctattg----tgctcttatgtgcatcattattttcaacttctcca--agttatagcatcttatgcagtttattggtgaaatactttt----acatgcttgaagttgatcctaccatgtttagagcactgagcccatgttggcaatcc-ttttgcttttcagCCCTAGATGGTTGCTGAAACAAGAAGTACCTAAGGTTGTCAAATCCATCAATAGGCAGTTGCGTGAAAAATCAATCAAGACAAAG

upper sequence: GRMZM2G168629_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 3'ss of exon 8
gtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcactagatatgaatgtgtatcttgtttttgctgctatgtttagcagaaaatatctgcatttagattgcacgttctgtttcctgtccccatgc-atcattctgttttgctttgcagCCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAG
                                       |  ||  | | |  || | |   ||  | |  |  |    || |   | || |  || ||  ||    ||  ||||   |     |  ||  | ||     || |||  |    |||  || |||    || ||  ||||||||| ||||||| | ||||||||||| ||||| || || || |||||||| || ||||| |||||||| |                       
---------------------------------------tatttgcatcat--tattttcaacttttccaagttatagcatct---tatgcagtttattggtgaaa-tacttttacatgcttgaagttgattctac----catgtttagAGCACTGAGCCTATGTTGGCAATCC-TTTTGCTTTTCAGCCCTAGATGGTTGCTGAAACAAGAAGTACCTAAGGTTGTCAAATCCATCAATAGGCAGTTGC-----------------------

upper sequence: GRMZM2G168629_T03 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA07G40230.2 (Glycine max), 3'ss of exon 12
gtgaggttcatcgaactgcagttagaaaaactggtgccattattataacgtggtaatctggtctcatactgggcactagatatgaatgtgtatcttgtttttgctgctatgtttagcagaaaatatctgcatttagattgcacgttctgtttcctgtccccatgcatcattctgttttgctttgcagCCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAG
                                                                            | | ||| | |    | ||| ||  |   | || |   ||      | |    ||  || | ||||     | ||  ||| |        |    |||   |||  ||||| ||||| |||||| |||||||||| ||  | ||  ||||||| ||||| || |||||||| ||||| ||||| ||||||||||||
----------------------------------------------------------------------------tggctatcacttc--agctt-ttcctatagttaagcccag-gttttacaataacacataaaatgcagcaattattgactgcct-------tagcactgacatgcaatgcagTCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagattgcacgttctgtttcctgtccccatgcatcattctgttttgctttgcagCCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAG
                                     ttctgttttgcttt  CT-rich tract