Sequence
atgc intronic sequence ATGC exonic sequencegtaagttttatacgcttcaatctgatgaacaatgatcagaacttcgttcattagcgaatgtataatagaataagttgctgttgttggccgccgcgcgcagCTCTGCTGTGCAAGATTGGGGCCTTGAGATCGTTCTCGCTGGAGAAGATACACTACTGGAGGGAGAGAGCGTCCGGCATGAGCTCGCTGGCATACTTCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G166889_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os06g51460.1 (Oryza sativa), 3'ss of exon 11
-----------------------------gtaagttttat--acgcttcaatct--gatgaacaatgatcagaacttcgttcattagcgaatgtataat-----agaataagttgctgttgttggc---cgccgcgcgcagCTCTGCTGTGCAAGATTGGGGCCTTGAGATCGTTCTCGCTGGAGAAGATACACTACTGGAGGGAGAGAGCGTCCGGCATGAGCTCGCTGGCATACTTCCT
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gtaagtttctcagcccatcctggaaaggagtcttttttatccatgaattattttcagagaaataatgtttatataatacgtaatgagaaaataagtaagtagtaaaaataaggtaataagcgtgggatatattaattgcagCTCTGCTGTGCAAGATTGGAGCGCTGAGATCATTCTCTCTGGAGAAGATACACTACTGGAGGGAGAGAGCATCTGGAATGAGCTCGTTGGCGTACTTCAT
upper sequence: GRMZM2G166889_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA10G35310.1 (Glycine max), 3'ss of exon 13
gtaagttttatacgcttcaatctgatgaacaatgatcagaacttcgttcattagcgaatgtataatagaataagttgctgttgttggccgccgcgcgcagCTCTGCTGTGCAAGATTGGGGCCTTGAGATCGTTCTCGCTGGAGAAGATACACTACTGGAGGGAGAGAGCGTCCGGCATGAGCTCGCTGGCATACTTCCT
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gtaagtcacataaatatcac-----taaataatgtaccaactacctagcattcatg--tgagcaatgcttta--ttcttatctattgttgttaatttcagCTCTTCTGTGCAAAATAGCGGCCTTGAGATCATTTTCTCTGGATAAATTACACTATTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTCCT
upper sequence: GRMZM2G166889_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA20G32210.1 (Glycine max), 3'ss of exon 12
gtaagttttatacgcttcaatctgat-gaacaatgatcagaacttcgttcattagcgaatgtataatagaataagttgctgttgttggccgccgcgcgcagCTCTGCTGTGCAAGATTGGGGCCTTGAGATCGTTCTCGCTGGAGAAGATACACTACTGGAGGGAGAGAGCGTCCGGCATGAGCTCGCTGGCATACTTCCT
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gtaagtcatataaatataaatatcattaaacaatgtatctactacctagcattcatg--tgagcaatgcttta--ttcttatctattattgttaatttcagCTCTTCTGTGCAAAATAGCGGCCTTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTCCT
upper sequence: GRMZM2G166889_T01 (Zea mays), 3'ss of exon 11
lower sequence: Vv06s0004g02490.t01 (Vitis vinifera), 3'ss of exon 11
-gtaagttttatacgcttcaatctgatgaacaatgatcagaacttcgttcattagcgaatgtataatagaataagttgctgttgttggccgccg-cgcgcagCTCTGCTGTGCAAGATTGGGGCCTTGAGATCGTTCTCGCTGGAGAAGATACACTACTGGAGGGAGAGAGCGTCCGGCATGAGCTCGCTGGCATACTTCCT
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ggaacctgttttaggattgattttacagatttcttatggagtcttcttccacaccatgagttatttctcatcca--tccaaattttggctgctaactttcagCTCTCCTCTGCAAGATTGGGGCATTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGAGAGAGGGCTTCGGGAATGAGCAGCTTGGCATACTTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcattagcgaatgtataatagaataagttgctgttgttggccgccgcgcgcagCTCTGCTGTGCAAGATTGGGGCCTTGAGATCGTTCTCGCTGGAGAAGATACACTACTGGAGGGAGAGAGCGTCCGGCATGAGCTCGCTGGCATACTTCCT
aatgtataatagaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttttatacgcttcaatctgatgaacaatgatcagaacttcgttcattagcgaatgtataatagaataagttgctgttgttggccgccgcgcgcagCTCTGCTGTGCAAGATTGGGGCCTTGAGATCGTTCTCGCTGGAGAAGATACACTACTGGAGGGAGAGAGCGTCCGGCATGAGCTCGCTGGCATACTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG