1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gctggtcaacatgtgaactcgtgaagcaagccttgtgttacttctgtaagccttgtgtaattgtgttacctacttattctattcactttatatccccaagGAGTTGAATAAGGACCTAACACAAAAGCTGGAGATTCAGACACAGAGGCTTGAACTATTGACTTCTCAAAGGATGGCTAACGAGAATGCCCTGGCAAAAC
species | Zea mays |
transcript | GRMZM2G166873_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGCTGCTGCGAGCACTGAGAATTGAGTCATCCAACTGCTCCAAGCTGAAG GAGTTGAATAAGGACCTAACACAAAAGCTGGAGATTCAGACACAGAGGCTTEST: gi|110526202|gb|EE030386.1|EE030386
genomic: CGCTGCTGCGAGCACTGAGAATTGAGTCATCCAACTGCTCCAAGCTGAAGgtattgacta ... tatccccaagGAGTTGAATAAGGACCTAACACAAAAGCTGGAGATTCAGACACAGAGGCTT
EST: GGCTGCTGCGAGCACTGAGAATTGAGTCATCCAACTGCTCCAAGCTGAAG GAGTTGAATAAGGACCTAACACAAAAGCTGGAGATTCAGACACAGAGGCTT
genomic: -GCTGCTGCGAGCACTGAGAATTGAGTCATCCAACTGCTCCAAGCTGAAGgtattgacta ... tatccccaagGAGTTGAATAAGGACCTAACACAAAAGCTGGAGATTCAGACACAGAGGCTT
gtaagccttgtgtaattgtgttacctacttattctattcactttatatccccaagGAGTTGAATAAGGACCTAACACAAAAGCTGGAGATTCAGACACAGAGGCTTGAACTATTGACTTCTCAAAGGATGGCTAACGAGAATGCCCTGGCAAAAC
tatcccc CT-rich tract
tattcactttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctggtcaacatgtgaactcgtgaagcaagccttgtgttacttctgtaagccttgtgtaattgtgttacctacttattctattcactttatatccccaagGAGTTGAATAAGGACCTAACACAAAAGCTGGAGATTCAGACACAGAGGCTTGAACTATTGACTTCTCAAAGGATGGCTAACGAGAATGCCCTGGCAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
gctggtc
- - - - -catgtga
- - - - - - - - - - - - -gcaagcc
- - - - - - - - - - - - - - - ccttgtg
- - - - - - - - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - -tgttact